DECK: Distance and environment-dependent, coarse-grained, knowledge-based potentials for protein-protein docking

Por Liu, Shiyong, Vakser, Ilya A
Publicado em 2011

Applications of Systems Science in Biomedical Research Regarding Obesity and Noncommunicable Chronic Diseases: Opportunities, Promise, and Challenges(1)(2)(3)(4)

Por Wang, Youfa, Xue, Hong, Liu, Shiyong
Publicado no Adv Nutr (2015)

Dockground protein–protein docking decoy set

Por Liu, Shiyong, Gao, Ying, Vakser, Ilya A.
Publicado em 2008

The dataset for protein–RNA binding affinity

Por Yang, Xiufeng, Li, Haotian, Huang, Yangyu, Liu, Shiyong
Publicado em 2013

ASPDock: protein-protein docking algorithm using atomic solvation parameters model

Por Li, Lin, Guo, Dachuan, Huang, Yangyu, Liu, Shiyong, Xiao, Yi
Publicado em 2011

A novel protocol for three-dimensional structure prediction of RNA-protein complexes

Por Huang, Yangyu, Liu, Shiyong, Guo, Dachuan, Li, Lin, Xiao, Yi
Publicado em 2013

Food Policy Approaches to Obesity Prevention: An International Perspective

Por Zhang, Qi, Liu, Shiyong, Liu, Ruicui, Xue, Hong, Wang, Youfa
Publicado no Curr Obes Rep (2014)

Cortical dysplasia: a possible substrate for brain tumors

Por Liu, Shiyong, Zhang, Chunqing, Shu, Haifeng, Wion, Didier, Yang, Hui
Publicado no Future Oncol (2012)

Template-Based Modeling of Protein-RNA Interactions

Por Zheng, Jinfang, Kundrotas, Petras J., Vakser, Ilya A., Liu, Shiyong
Publicado no PLoS Comput Biol (2016)

Nonnatural protein–protein interaction-pair design by key residues grafting

Por Liu, Sen, Liu, Shiyong, Zhu, Xiaolei, Liang, Huanhuan, Cao, Aoneng, Chang, Zhijie, Lai, Luhua
Publicado em 2007

Differentially expressed proteins underlying childhood cortical dysplasia with epilepsy identified by iTRAQ proteomic profiling

Por Qin, Lu, Liu, Xi, Liu, Shiyong, Liu, Yi, Yang, Yixuan, Yang, Hui, Chen, Yangmei, Chen, Lifen
Publicado no PLoS One (2017)

Break CDK2/Cyclin E1 Interface Allosterically with Small Peptides

Por Chen, Hao, Zhao, Yunjie, Li, Haotian, Zhang, Dongyan, Huang, Yanzhao, Shen, Qi, Van Duyne, Rachel, Kashanchi, Fatah, Zeng, Chen, Liu, Shiyong
Publicado em 2014

Expression of pannexin 1 and 2 in cortical lesions from intractable epilepsy patients with focal cortical dysplasia

Por Li, Song, Zang, Zhenle, He, Jiaojiang, Chen, Xin, Yu, Sixun, Pei, Yuchun, Hou, Zhi, An, Ning, Yang, Hui, Zhang, Chunqing, Liu, Shiyong
Publicado no Oncotarget (2016)

New differentially expressed genes and differential DNA methylation underlying refractory epilepsy

Por Liu, Xi, Ou, Shu, Xu, Tao, Liu, Shiyong, Yuan, Jinxian, Huang, Hao, Qin, Lu, Yang, Hui, Chen, Lifen, Tan, Xinjie, Chen, Yangmei
Publicado no Oncotarget (2016)

Community-wide Evaluation of Methods for Predicting the Effect of Mutations on Protein-Protein Interactions

Por Moretti, Rocco, Fleishman, Sarel J., Agius, Rudi, Torchala, Mieczyslaw, Bates, Paul A., Kastritis, Panagiotis L., Rodrigues, João P. G. L. M., Trellet, Mikaël, Bonvin, Alexandre M. J. J., Cui, Meng, Rooman, Marianne, Gillis, Dimitri, Dehouck, Yves, Moal, Iain, Romero-Durana, Miguel, Perez-Cano, Laura, Pallara, Chiara, Jimenez, Brian, Fernandez-Recio, Juan, Flores, Samuel, Pacella, Michael, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Popov, Petr, Grudinin, Sergei, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Zhao, Nan, Korkin, Dmitry, Zhu, Xiaolei, Demerdash, Omar N. A., Mitchell, Julie C., Kanamori, Eiji, Tsuchiya, Yuko, Nakamura, Haruki, Lee, Hasup, Park, Hahnbeom, Seok, Chaok, Sarmiento, Jamica, Liang, Shide, Teraguchi, Shusuke, Standley, Daron M., Shimoyama, Hiromitsu, Terashi, Genki, Takeda-Shitaka, Mayuko, Iwadate, Mitsuo, Umeyama, Hideaki, Beglov, Dmitri, Hall, David R., Kozakov, Dima, Vajda, Sandor, Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Huang, Yangyu, Li, Haotian, Yang, Xiufeng, Ji, Xiaofeng, Liu, Shiyong, Xiao, Yi, Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Sheng-You, Zou, Xiaoqin, Velankar, Sameer, Janin, Joël, Wodak, Shoshana J., Baker, David
Publicado em 2013

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

Por Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C., Demerdash, Omar N.A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H., Li, Xiaofan, Bates, Paul A., Zacharias, Martin, Park, Hahnbeom, Ko, Jun-su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Şefik Kerem, Ozbek, Pemra, Ben Tal, Nir, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G., Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H., Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M., Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M., Hall, Robert G., Morgan, Jessica L., Hsu, Victor L., Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Zhang, Weiyi, Camacho, Carlos J., Kilambi, Krishna P., Sircar, Aroop, Gray, Jeffrey J., Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
Publicado em 2011