Using 3dRPC for RNA–protein complex structure prediction

Por Huang, Yangyu, Li, Haotian, Xiao, Yi
Publicado no Biophys Rep (2017)

A pair-conformation-dependent scoring function for evaluating 3D RNA-protein complex structures

Por Li, Haotian, Huang, Yangyu, Xiao, Yi
Publicado no PLoS One (2017)

The dataset for protein–RNA binding affinity

Por Yang, Xiufeng, Li, Haotian, Huang, Yangyu, Liu, Shiyong
Publicado em 2013

ASPDock: protein-protein docking algorithm using atomic solvation parameters model

Por Li, Lin, Guo, Dachuan, Huang, Yangyu, Liu, Shiyong, Xiao, Yi
Publicado em 2011

A novel protocol for three-dimensional structure prediction of RNA-protein complexes

Por Huang, Yangyu, Liu, Shiyong, Guo, Dachuan, Li, Lin, Xiao, Yi
Publicado em 2013

Automated and fast building of three-dimensional RNA structures

Por Zhao, Yunjie, Huang, Yangyu, Gong, Zhou, Wang, Yanjie, Man, Jianfen, Xiao, Yi
Publicado em 2012

Community-wide Evaluation of Methods for Predicting the Effect of Mutations on Protein-Protein Interactions

Por Moretti, Rocco, Fleishman, Sarel J., Agius, Rudi, Torchala, Mieczyslaw, Bates, Paul A., Kastritis, Panagiotis L., Rodrigues, João P. G. L. M., Trellet, Mikaël, Bonvin, Alexandre M. J. J., Cui, Meng, Rooman, Marianne, Gillis, Dimitri, Dehouck, Yves, Moal, Iain, Romero-Durana, Miguel, Perez-Cano, Laura, Pallara, Chiara, Jimenez, Brian, Fernandez-Recio, Juan, Flores, Samuel, Pacella, Michael, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Popov, Petr, Grudinin, Sergei, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Zhao, Nan, Korkin, Dmitry, Zhu, Xiaolei, Demerdash, Omar N. A., Mitchell, Julie C., Kanamori, Eiji, Tsuchiya, Yuko, Nakamura, Haruki, Lee, Hasup, Park, Hahnbeom, Seok, Chaok, Sarmiento, Jamica, Liang, Shide, Teraguchi, Shusuke, Standley, Daron M., Shimoyama, Hiromitsu, Terashi, Genki, Takeda-Shitaka, Mayuko, Iwadate, Mitsuo, Umeyama, Hideaki, Beglov, Dmitri, Hall, David R., Kozakov, Dima, Vajda, Sandor, Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Huang, Yangyu, Li, Haotian, Yang, Xiufeng, Ji, Xiaofeng, Liu, Shiyong, Xiao, Yi, Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Sheng-You, Zou, Xiaoqin, Velankar, Sameer, Janin, Joël, Wodak, Shoshana J., Baker, David
Publicado em 2013

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

Por Fleishman, Sarel J, Whitehead, Timothy A, Strauch, Eva-Maria, Corn, Jacob E, Qin, Sanbo, Zhou, Huan-Xiang, Mitchell, Julie C., Demerdash, Omar N.A, Takeda-Shitaka, Mayuko, Terashi, Genki, Moal, Iain H., Li, Xiaofan, Bates, Paul A., Zacharias, Martin, Park, Hahnbeom, Ko, Jun-su, Lee, Hasup, Seok, Chaok, Bourquard, Thomas, Bernauer, Julie, Poupon, Anne, Azé, Jérôme, Soner, Seren, Ovali, Şefik Kerem, Ozbek, Pemra, Ben Tal, Nir, Haliloglu, Türkan, Hwang, Howook, Vreven, Thom, Pierce, Brian G., Weng, Zhiping, Pérez-Cano, Laura, Pons, Carles, Fernández-Recio, Juan, Jiang, Fan, Yang, Feng, Gong, Xinqi, Cao, Libin, Xu, Xianjin, Liu, Bin, Wang, Panwen, Li, Chunhua, Wang, Cunxin, Robert, Charles H., Guharoy, Mainak, Liu, Shiyong, Huang, Yangyu, Li, Lin, Guo, Dachuan, Chen, Ying, Xiao, Yi, London, Nir, Itzhaki, Zohar, Schueler-Furman, Ora, Inbar, Yuval, Patapov, Vladimir, Cohen, Mati, Schreiber, Gideon, Tsuchiya, Yuko, Kanamori, Eiji, Standley, Daron M., Nakamura, Haruki, Kinoshita, Kengo, Driggers, Camden M., Hall, Robert G., Morgan, Jessica L., Hsu, Victor L., Zhan, Jian, Yang, Yuedong, Zhou, Yaoqi, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Zhang, Weiyi, Camacho, Carlos J., Kilambi, Krishna P., Sircar, Aroop, Gray, Jeffrey J., Ohue, Masahito, Uchikoga, Nobuyuki, Matsuzaki, Yuri, Ishida, Takashi, Akiyama, Yutaka, Khashan, Raed, Bush, Stephen, Fouches, Denis, Tropsha, Alexander, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Stranges, P Benjamin, Jacak, Ron, Kuhlman, Brian, Huang, Sheng-You, Zou, Xiaoqin, Wodak, Shoshana J, Janin, Joel, Baker, David
Publicado em 2011