Gene expression model (in)validation by Fourier analysis

by Konopka, Tomasz, Rooman, Marianne
Published 2010

Dynamic modeling of gene expression in prokaryotes: application to glucose-lactose diauxie in Escherichia coli

by Albert, Jaroslav, Rooman, Marianne
Published 2011

Design Principles of a Genetic Alarm Clock

by Albert, Jaroslav, Rooman, Marianne
Published 2012

Sequence and conformation effects on ionization potential and charge distribution of homo-nucleobase stacks using M06-2X hybrid density functional theory calculations

by Rooman, Marianne, Wintjens, René
Published 2013

Stability Curve Prediction of Homologous Proteins Using Temperature-Dependent Statistical Potentials

by Pucci, Fabrizio, Rooman, Marianne
Published 2014

Is the Cell Nucleus a Necessary Component in Precise Temporal Patterning?

by Albert, Jaroslav, Rooman, Marianne
Published in PLoS One (2015)

Improved insights into protein thermal stability: from the molecular to the structurome scale

by Pucci, Fabrizio, Rooman, Marianne
Published in Philos Trans A Math Phys Eng Sci (2016)

Deciphering noise amplification and reduction in open chemical reaction networks

by Pucci, Fabrizio, Rooman, Marianne
Published in J R Soc Interface (2018)

Relation between DNA ionization potentials, single base substitutions and pathogenic variants

by Pucci, Fabrizio, Rooman, Marianne
Published in BMC Genomics (2019)

Prediction and Evolution of the Molecular Fitness of SARS-CoV-2 Variants: Introducing SpikePro

by Pucci, Fabrizio, Rooman, Marianne
Published in Viruses (2021)

SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence

by Dalkas, Georgios A., Rooman, Marianne
Published in BMC Bioinformatics (2017)

Database-Derived Potentials Dependent on Protein Size for In Silico Folding and Design

by Dehouck, Yves, Gilis, Dimitri, Rooman, Marianne
Published 2004

Thermo- and Mesostabilizing Protein Interactions Identified by Temperature-Dependent Statistical Potentials

by Folch, Benjamin, Dehouck, Yves, Rooman, Marianne
Published 2010

Robust non-linear differential equation models of gene expression evolution across Drosophila development

by Haye, Alexandre, Albert, Jaroslav, Rooman, Marianne
Published 2012

Modeling the Drosophila Gene Cluster Regulation Network for Muscle Development

by Haye, Alexandre, Albert, Jaroslav, Rooman, Marianne
Published 2014

Predicting protein thermal stability changes upon point mutations using statistical potentials: Introducing HoTMuSiC

by Pucci, Fabrizio, Bourgeas, Raphaël, Rooman, Marianne
Published in Sci Rep (2016)

Large-scale in silico mutagenesis experiments reveal optimization of genetic code and codon usage for protein mutational robustness

by Schwersensky, Martin, Rooman, Marianne, Pucci, Fabrizio
Published in BMC Biol (2020)

Modeling the Molecular Impact of SARS-CoV-2 Infection on the Renin-Angiotensin System

by Pucci, Fabrizio, Bogaerts, Philippe, Rooman, Marianne
Published in Viruses (2020)

In Silico Analysis of the Molecular-Level Impact of SMPD1 Variants on Niemann-Pick Disease Severity

by Ancien, François, Pucci, Fabrizio, Rooman, Marianne
Published in Int J Mol Sci (2021)

Detection of Perturbation Phases and Developmental Stages in Organisms from DNA Microarray Time Series Data

by Rooman, Marianne, Albert, Jaroslav, Dehouck, Yves, Haye, Alexandre
Published 2011