Enzymatic complexes across scales

por Kastritis, Panagiotis L., Gavin, Anne-Claude
Publicado en Essays Biochem (2018)

Unstructured regions of large enzymatic complexes control the availability of metabolites with signaling functions

por Skalidis, Ioannis, Tüting, Christian, Kastritis, Panagiotis L.
Publicado en Cell Commun Signal (2020)

On the binding affinity of macromolecular interactions: daring to ask why proteins interact

por Kastritis, Panagiotis L., Bonvin, Alexandre M. J. J.
Publicado 2013

Detecting Protein Communities in Native Cell Extracts by Machine Learning: A Structural Biologist’s Perspective

por Kyrilis, Fotis L., Belapure, Jaydeep, Kastritis, Panagiotis L.
Publicado en Front Mol Biosci (2021)

Structural analysis of 70S ribosomes by cross-linking/mass spectrometry reveals conformational plasticity

por Tüting, Christian, Iacobucci, Claudio, Ihling, Christian H., Kastritis, Panagiotis L., Sinz, Andrea
Publicado en Sci Rep (2020)

HADDOCK(2P2I): A Biophysical Model for Predicting the Binding Affinity of Protein–Protein Interaction Inhibitors

por Kastritis, Panagiotis L., Rodrigues, João P. G. L. M., Bonvin, Alexandre M. J. J.
Publicado 2014

Building Macromolecular Assemblies by Information-driven Docking: INTRODUCING THE HADDOCK MULTIBODY DOCKING SERVER

por Karaca, Ezgi, Melquiond, Adrien S. J., de Vries, Sjoerd J., Kastritis, Panagiotis L., Bonvin, Alexandre M. J. J.
Publicado 2010

Subnanometre-resolution structure of the doublet microtubule reveals new classes of microtubule-associated proteins

por Ichikawa, Muneyoshi, Liu, Dinan, Kastritis, Panagiotis L., Basu, Kaustuv, Hsu, Tzu Chin, Yang, Shunkai, Bui, Khanh Huy
Publicado en Nat Commun (2017)

dMM-PBSA: A New HADDOCK Scoring Function for Protein-Peptide Docking

por Spiliotopoulos, Dimitrios, Kastritis, Panagiotis L., Melquiond, Adrien S. J., Bonvin, Alexandre M. J. J., Musco, Giovanna, Rocchia, Walter, Spitaleri, Andrea
Publicado en Front Mol Biosci (2016)

A structure-based benchmark for protein–protein binding affinity

por Kastritis, Panagiotis L, Moal, Iain H, Hwang, Howook, Weng, Zhiping, Bates, Paul A, Bonvin, Alexandre M J J, Janin, Joël
Publicado 2011

Structural models of human ACE2 variants with SARS-CoV-2 Spike protein for structure-based drug design

por Sorokina, Marija, M. C. Teixeira, João, Barrera-Vilarmau, Susana, Paschke, Reinhard, Papasotiriou, Ioannis, Rodrigues, João P. G. L. M., Kastritis, Panagiotis L.
Publicado en Sci Data (2020)

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

por Rodrigues, João P. G. L. M., Barrera-Vilarmau, Susana, M. C. Teixeira, João, Sorokina, Marija, Seckel, Elizabeth, Kastritis, Panagiotis L., Levitt, Michael
Publicado en PLoS Comput Biol (2020)

Antimicrobial and Efflux Pump Inhibitory Activity of Caffeoylquinic Acids from Artemisia absinthium against Gram-Positive Pathogenic Bacteria

por Fiamegos, Yiannis C., Kastritis, Panagiotis L., Exarchou, Vassiliki, Han, Haley, Bonvin, Alexandre M. J. J., Vervoort, Jacques, Lewis, Kim, Hamblin, Michael R., Tegos, George P.
Publicado 2011

2.7 Å cryo-EM structure of vitrified M. musculus H-chain apoferritin from a compact 200 keV cryo-microscope

por Hamdi, Farzad, Tüting, Christian, Semchonok, Dmitry A., Visscher, Koen M., Kyrilis, Fotis L., Meister, Annette, Skalidis, Ioannis, Schmidt, Lisa, Parthier, Christoph, Stubbs, Milton T., Kastritis, Panagiotis L.
Publicado en PLoS One (2020)

Constructing artificial respiratory chain in polymer compartments: Insights into the interplay between bo(3) oxidase and the membrane

por Marušič, Nika, Otrin, Lado, Zhao, Ziliang, Lira, Rafael B., Kyrilis, Fotis L., Hamdi, Farzad, Kastritis, Panagiotis L., Vidaković-Koch, Tanja, Ivanov, Ivan, Sundmacher, Kai, Dimova, Rumiana
Publicado en Proc Natl Acad Sci U S A (2020)

Coupling proteomics and metabolomics for the unsupervised identification of protein–metabolite interactions in Chaetomium thermophilum

por Li, Yuanyue, Kuhn, Michael, Zukowska-Kasprzyk, Joanna, Hennrich, Marco L., Kastritis, Panagiotis L., O’Reilly, Francis J., Phapale, Prasad, Beck, Martin, Gavin, Anne-Claude, Bork, Peer
Publicado en PLoS One (2021)

Flexibility of intrinsically disordered degrons in AUX/IAA proteins reinforces auxin co-receptor assemblies

por Niemeyer, Michael, Moreno Castillo, Elena, Ihling, Christian H., Iacobucci, Claudio, Wilde, Verona, Hellmuth, Antje, Hoehenwarter, Wolfgang, Samodelov, Sophia L., Zurbriggen, Matias D., Kastritis, Panagiotis L., Sinz, Andrea, Calderón Villalobos, Luz Irina A.
Publicado en Nat Commun (2020)

Author Correction: Flexibility of intrinsically disordered degrons in AUX/IAA proteins reinforces auxin co-receptor assemblies

por Niemeyer, Michael, Castillo, Elena Moreno, Ihling, Christian H., Iacobucci, Claudio, Wilde, Verona, Hellmuth, Antje, Hoehenwarter, Wolfgang, Samodelov, Sophia L., Zurbriggen, Matias D., Kastritis, Panagiotis L., Sinz, Andrea, Villalobos, Luz Irina A. Calderón
Publicado en Nat Commun (2021)

Updates to the integrated protein-protein interaction benchmarks: Docking benchmark version 5 and affinity benchmark version 2

por Vreven, Thom, Moal, Iain H., Vangone, Anna, Pierce, Brian G., Kastritis, Panagiotis L., Torchala, Mieczyslaw, Chaleil, Raphael, Jiménez-García, Brian, Bates, Paul A., Fernandez-Recio, Juan, Bonvin, Alexandre M.J.J., Weng, Zhiping
Publicado en J Mol Biol (2015)

Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress

por Zhou, Ye, Kastritis, Panagiotis L., Dougherty, Shannon E., Bouvette, Jonathan, Hsu, Allen L., Burbaum, Laura, Mosalaganti, Shyamal, Pfeffer, Stefan, Hagen, Wim J. H., Förster, Friedrich, Borgnia, Mario J., Vogel, Christine, Beck, Martin, Bartesaghi, Alberto, Silva, Gustavo M.
Publicado en Proc Natl Acad Sci U S A (2020)