Rapid Calculation of Protein pK(a) Values Using Rosetta

Por Kilambi, Krishna Praneeth, Gray, Jeffrey J.
Publicado em 2012

Protein-Protein Docking with Dynamic Residue Protonation States

Por Kilambi, Krishna Praneeth, Reddy, Kavan, Gray, Jeffrey J.
Publicado no PLoS Comput Biol (2014)

Targeted DNA Methylation Using an Artificially Bisected M.HhaI Fused to Zinc Fingers

Por Chaikind, Brian, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Ostermeier, Marc
Publicado em 2012

Correction: Targeted DNA Methylation Using an Artificially Bisected M.HhaI Fused to Zinc Fingers

Por Chaikind, Brian, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Ostermeier, Marc
Publicado em 2014

A generalized approach to sampling backbone conformations with RosettaDock for CAPRI rounds 13–19

Por Sircar, Aroop, Chaudhury, Sidhartha, Kilambi, Krishna Praneeth, Berrondo, Monica, Gray, Jeffrey J.
Publicado em 2010

Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20–27

Por Kilambi, Krishna Praneeth, Pacella, Michael S., Xu, Jianqing, Labonte, Jason W., Porter, Justin R., Muthu, Pravin, Drew, Kevin, Kuroda, Daisuke, Schueler-Furman, Ora, Bonneau, Richard, Gray, Jeffrey J.
Publicado em 2013

Adding Diverse Noncanonical Backbones to Rosetta: Enabling Peptidomimetic Design

Por Drew, Kevin, Renfrew, P. Douglas, Craven, Timothy W., Butterfoss, Glenn L., Chou, Fang-Chieh, Lyskov, Sergey, Bullock, Brooke N., Watkins, Andrew, Labonte, Jason W., Pacella, Michael, Kilambi, Krishna Praneeth, Leaver-Fay, Andrew, Kuhlman, Brian, Gray, Jeffrey J., Bradley, Philip, Kirshenbaum, Kent, Arora, Paramjit S., Das, Rhiju, Bonneau, Richard
Publicado em 2013

Functional Loss of Semaphorin 3C and/or Semaphorin 3D and Their Epistatic Interaction with Ret Are Critical to Hirschsprung Disease Liability

Por Jiang, Qian, Arnold, Stacey, Heanue, Tiffany, Kilambi, Krishna Praneeth, Doan, Betty, Kapoor, Ashish, Ling, Albee Yun, Sosa, Maria X., Guy, Moltu, Jiang, Qingguang, Burzynski, Grzegorz, West, Kristen, Bessling, Seneca, Griseri, Paola, Amiel, Jeanne, Fernandez, Raquel M., Verheij, Joke B.G.M., Hofstra, Robert M.W., Borrego, Salud, Lyonnet, Stanislas, Ceccherini, Isabella, Gray, Jeffrey J., Pachnis, Vassilis, McCallion, Andrew S., Chakravarti, Aravinda
Publicado no Am J Hum Genet (2015)

Blind Prediction of Interfacial Water Positions in CAPRI

Por Lensink, Marc F., Moal, Iain H., Bates, Paul A., Kastritis, Panagiotis L., Melquiond, Adrien S.J., Karaca, Ezgi, Schmitz, Christophe, van Dijk, Marc, Bonvin, Alexandre M.J.J., Eisenstein, Miriam, Jiménez-García, Brian, Grosdidier, Solène, Solernou, Albert, Pérez-Cano, Laura, Pallara, Chiara, Fernández-Recio, Juan, Xu, Jianqing, Muthu, Pravin, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Grudinin, Sergei, Derevyanko, Georgy, Mitchell, Julie C., Wieting, John, Kanamori, Eiji, Tsuchiya, Yuko, Murakami, Yoichi, Sarmiento, Joy, Standley, Daron M., Shirota, Matsuyuki, Kinoshita, Kengo, Nakamura, Haruki, Chavent, Matthieu, Ritchie, David W., Park, Hahnbeom, Ko, Junsu, Lee, Hasup, Seok, Chaok, Shen, Yang, Kozakov, Dima, Vajda, Sandor, Kundrotas, Petras J., Vakser, Ilya A., Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Buch, Idit, Farkash, Efrat, Wolfson, Haim J., Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Shen-You, Zou, Xiaoqin, Wojdyla, Justyna A., Kleanthous, Colin, Wodak, Shoshana J.
Publicado no Proteins (2013)

Community-wide Evaluation of Methods for Predicting the Effect of Mutations on Protein-Protein Interactions

Por Moretti, Rocco, Fleishman, Sarel J., Agius, Rudi, Torchala, Mieczyslaw, Bates, Paul A., Kastritis, Panagiotis L., Rodrigues, João P. G. L. M., Trellet, Mikaël, Bonvin, Alexandre M. J. J., Cui, Meng, Rooman, Marianne, Gillis, Dimitri, Dehouck, Yves, Moal, Iain, Romero-Durana, Miguel, Perez-Cano, Laura, Pallara, Chiara, Jimenez, Brian, Fernandez-Recio, Juan, Flores, Samuel, Pacella, Michael, Kilambi, Krishna Praneeth, Gray, Jeffrey J., Popov, Petr, Grudinin, Sergei, Esquivel-Rodríguez, Juan, Kihara, Daisuke, Zhao, Nan, Korkin, Dmitry, Zhu, Xiaolei, Demerdash, Omar N. A., Mitchell, Julie C., Kanamori, Eiji, Tsuchiya, Yuko, Nakamura, Haruki, Lee, Hasup, Park, Hahnbeom, Seok, Chaok, Sarmiento, Jamica, Liang, Shide, Teraguchi, Shusuke, Standley, Daron M., Shimoyama, Hiromitsu, Terashi, Genki, Takeda-Shitaka, Mayuko, Iwadate, Mitsuo, Umeyama, Hideaki, Beglov, Dmitri, Hall, David R., Kozakov, Dima, Vajda, Sandor, Pierce, Brian G., Hwang, Howook, Vreven, Thom, Weng, Zhiping, Huang, Yangyu, Li, Haotian, Yang, Xiufeng, Ji, Xiaofeng, Liu, Shiyong, Xiao, Yi, Zacharias, Martin, Qin, Sanbo, Zhou, Huan-Xiang, Huang, Sheng-You, Zou, Xiaoqin, Velankar, Sameer, Janin, Joël, Wodak, Shoshana J., Baker, David
Publicado em 2013