Blind Predictions of DNA and RNA Tweezers Experiments with Force and Torque

بواسطة Chou, Fang-Chieh, Lipfert, Jan, Das, Rhiju
منشور في 2014

Blind tests of RNA nearest-neighbor energy prediction

بواسطة Chou, Fang-Chieh, Kladwang, Wipapat, Kappel, Kalli, Das, Rhiju
الحاوية / القاعدة Proc Natl Acad Sci U S A (2016)

RNA Structure Refinement using the ERRASER-Phenix pipeline

بواسطة Chou, Fang-Chieh, Echols, Nathaniel, Terwilliger, Thomas C., Das, Rhiju
الحاوية / القاعدة Methods Mol Biol (2016)

Correcting pervasive errors in RNA crystallography through enumerative structure prediction

بواسطة Chou, Fang-Chieh, Sripakdeevong, Parin, Dibrov, Sergey M., Hermann, Thomas, Das, Rhiju
منشور في 2012

Consistent global structures of complex RNA states through multidimensional chemical mapping

بواسطة Cheng, Clarence Yu, Chou, Fang-Chieh, Kladwang, Wipapat, Tian, Siqi, Cordero, Pablo, Das, Rhiju
الحاوية / القاعدة eLife (2015)

Correction: Consistent global structures of complex RNA states through multidimensional chemical mapping

بواسطة Yu Cheng, Clarence, Chou, Fang-Chieh, Kladwang, Wipapat, Tian, Siqi, Cordero, Pablo, Das, Rhiju
الحاوية / القاعدة eLife (2015)

Double-stranded RNA under force and torque: Similarities to and striking differences from double-stranded DNA

بواسطة Lipfert, Jan, Skinner, Gary M., Keegstra, Johannes M., Hensgens, Toivo, Jager, Tessa, Dulin, David, Köber, Mariana, Yu, Zhongbo, Donkers, Serge P., Chou, Fang-Chieh, Das, Rhiju, Dekker, Nynke H.
منشور في 2014

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)

بواسطة Lyskov, Sergey, Chou, Fang-Chieh, Conchúir, Shane Ó., Der, Bryan S., Drew, Kevin, Kuroda, Daisuke, Xu, Jianqing, Weitzner, Brian D., Renfrew, P. Douglas, Sripakdeevong, Parin, Borgo, Benjamin, Havranek, James J., Kuhlman, Brian, Kortemme, Tanja, Bonneau, Richard, Gray, Jeffrey J., Das, Rhiju
منشور في 2013

Adding Diverse Noncanonical Backbones to Rosetta: Enabling Peptidomimetic Design

بواسطة Drew, Kevin, Renfrew, P. Douglas, Craven, Timothy W., Butterfoss, Glenn L., Chou, Fang-Chieh, Lyskov, Sergey, Bullock, Brooke N., Watkins, Andrew, Labonte, Jason W., Pacella, Michael, Kilambi, Krishna Praneeth, Leaver-Fay, Andrew, Kuhlman, Brian, Gray, Jeffrey J., Bradley, Philip, Kirshenbaum, Kent, Arora, Paramjit S., Das, Rhiju, Bonneau, Richard
منشور في 2013

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

بواسطة Miao, Zhichao, Adamiak, Ryszard W., Blanchet, Marc-Frédérick, Boniecki, Michal, Bujnicki, Janusz M., Chen, Shi-Jie, Cheng, Clarence, Chojnowski, Grzegorz, Chou, Fang-Chieh, Cordero, Pablo, Cruz, José Almeida, Ferré-D'Amaré, Adrian R., Das, Rhiju, Ding, Feng, Dokholyan, Nikolay V., Dunin-Horkawicz, Stanislaw, Kladwang, Wipapat, Krokhotin, Andrey, Lach, Grzegorz, Magnus, Marcin, Major, François, Mann, Thomas H., Masquida, Benoît, Matelska, Dorota, Meyer, Mélanie, Peselis, Alla, Popenda, Mariusz, Purzycka, Katarzyna J., Serganov, Alexander, Stasiewicz, Juliusz, Szachniuk, Marta, Tandon, Arpit, Tian, Siqi, Wang, Jian, Xiao, Yi, Xu, Xiaojun, Zhang, Jinwei, Zhao, Peinan, Zok, Tomasz, Westhof, Eric
الحاوية / القاعدة RNA (2015)

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

بواسطة Miao, Zhichao, Adamiak, Ryszard W., Antczak, Maciej, Batey, Robert T., Becka, Alexander J., Biesiada, Marcin, Boniecki, Michał J., Bujnicki, Janusz M., Chen, Shi-Jie, Cheng, Clarence Yu, Chou, Fang-Chieh, Ferré-D'Amaré, Adrian R., Das, Rhiju, Dawson, Wayne K., Ding, Feng, Dokholyan, Nikolay V., Dunin-Horkawicz, Stanisław, Geniesse, Caleb, Kappel, Kalli, Kladwang, Wipapat, Krokhotin, Andrey, Łach, Grzegorz E., Major, François, Mann, Thomas H., Magnus, Marcin, Pachulska-Wieczorek, Katarzyna, Patel, Dinshaw J., Piccirilli, Joseph A., Popenda, Mariusz, Purzycka, Katarzyna J., Ren, Aiming, Rice, Greggory M., Santalucia, John, Sarzynska, Joanna, Szachniuk, Marta, Tandon, Arpit, Trausch, Jeremiah J., Tian, Siqi, Wang, Jian, Weeks, Kevin M., Williams, Benfeard, Xiao, Yi, Xu, Xiaojun, Zhang, Dong, Zok, Tomasz, Westhof, Eric
الحاوية / القاعدة RNA (2017)

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

بواسطة Miao, Zhichao, Adamiak, Ryszard W., Antczak, Maciej, Boniecki, Michał J., Bujnicki, Janusz, Chen, Shi-Jie, Cheng, Clarence Yu, Cheng, Yi, Chou, Fang-Chieh, Das, Rhiju, Dokholyan, Nikolay V., Ding, Feng, Geniesse, Caleb, Jiang, Yangwei, Joshi, Astha, Krokhotin, Andrey, Magnus, Marcin, Mailhot, Olivier, Major, Francois, Mann, Thomas H., Piątkowski, Paweł, Pluta, Radoslaw, Popenda, Mariusz, Sarzynska, Joanna, Sun, Lizhen, Szachniuk, Marta, Tian, Siqi, Wang, Jian, Wang, Jun, Watkins, Andrew M., Wiedemann, Jakub, Xiao, Yi, Xu, Xiaojun, Yesselman, Joseph D., Zhang, Dong, Zhang, Yi, Zhang, Zhenzhen, Zhao, Chenhan, Zhao, Peinan, Zhou, Yuanzhe, Zok, Tomasz, Żyła, Adriana, Ren, Aiming, Batey, Robert T., Golden, Barbara L., Huang, Lin, Lilley, David M., Liu, Yijin, Patel, Dinshaw J., Westhof, Eric
الحاوية / القاعدة RNA (2020)