Single-molecule correlated chemical probing reveals large-scale structural communication in the ribosome and the mechanism of the antibiotic spectinomycin in living cells

بواسطة Sengupta, Arnab, Rice, Greggory M., Weeks, Kevin M.
الحاوية / القاعدة PLoS Biol (2019)

Fingerprinting Non-Canonical and Tertiary RNA Structures by Differential SHAPE Reactivity

بواسطة Steen, Kady-Ann, Rice, Greggory M., Weeks, Kevin M.
منشور في 2012

RNA secondary structure modeling at consistent high accuracy using differential SHAPE

بواسطة Rice, Greggory M., Leonard, Christopher W., Weeks, Kevin M.
منشور في 2014

RNA SHAPE Analysis of Small RNAs and Riboswitches

بواسطة Rice, Greggory M., Busan, Steven, Karabiber, Fethullah, Favorov, Oleg V., Weeks, Kevin M.
الحاوية / القاعدة Methods Enzymol (2014)

Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile, and accurate RNA structure analysis

بواسطة Smola, Matthew J., Rice, Greggory M., Busan, Steven, Siegfried, Nathan A., Weeks, Kevin M.
الحاوية / القاعدة Nat Protoc (2015)

RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)

بواسطة Siegfried, Nathan A., Busan, Steven, Rice, Greggory M., Nelson, Julie A.E., Weeks, Kevin M.
الحاوية / القاعدة Nat Methods (2014)

RNA tertiary structure analysis by 2'-hydroxyl molecular interference

بواسطة Homan, Philip J., Tandon, Arpit, Rice, Greggory M., Ding, Feng, Dokholyan, Nikolay V., Weeks, Kevin M.
الحاوية / القاعدة Biochemistry (2014)

Distinctive features of lincRNA gene expression suggest widespread RNA-independent functions

بواسطة Tuck, Alex C, Natarajan, Kedar Nath, Rice, Greggory M, Borawski, Jason, Mohn, Fabio, Rankova, Aneliya, Flemr, Matyas, Wenger, Alice, Nutiu, Razvan, Teichmann, Sarah, Bühler, Marc
الحاوية / القاعدة Life Sci Alliance (2018)

Pervasive regulatory functions of mRNA structure revealed by high-resolution SHAPE probing

بواسطة Mustoe, Anthony M., Busan, Steven, Rice, Greggory M., Hajdin, Christine E., Peterson, Brant K., Ruda, Vera, Kubica, Neil, Nutiu, Razvan, Baryza, Jeremy L., Weeks, Kevin M.
الحاوية / القاعدة Cell (2018)

Direct mapping of higher-order RNA interactions by SHAPE-JuMP

بواسطة Christy, Thomas W., Giannetti, Catherine A., Houlihan, Gillian, Smola, Matthew J., Rice, Greggory M., Wang, Jian, Dokholyan, Nikolay V., Laederach, Alain, Holliger, Philipp, Weeks, Kevin M.
الحاوية / القاعدة Biochemistry (2021)

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

بواسطة Miao, Zhichao, Adamiak, Ryszard W., Antczak, Maciej, Batey, Robert T., Becka, Alexander J., Biesiada, Marcin, Boniecki, Michał J., Bujnicki, Janusz M., Chen, Shi-Jie, Cheng, Clarence Yu, Chou, Fang-Chieh, Ferré-D'Amaré, Adrian R., Das, Rhiju, Dawson, Wayne K., Ding, Feng, Dokholyan, Nikolay V., Dunin-Horkawicz, Stanisław, Geniesse, Caleb, Kappel, Kalli, Kladwang, Wipapat, Krokhotin, Andrey, Łach, Grzegorz E., Major, François, Mann, Thomas H., Magnus, Marcin, Pachulska-Wieczorek, Katarzyna, Patel, Dinshaw J., Piccirilli, Joseph A., Popenda, Mariusz, Purzycka, Katarzyna J., Ren, Aiming, Rice, Greggory M., Santalucia, John, Sarzynska, Joanna, Szachniuk, Marta, Tandon, Arpit, Trausch, Jeremiah J., Tian, Siqi, Wang, Jian, Weeks, Kevin M., Williams, Benfeard, Xiao, Yi, Xu, Xiaojun, Zhang, Dong, Zok, Tomasz, Westhof, Eric
الحاوية / القاعدة RNA (2017)