Informatics challenges in Structured RNA

Por Laederach, Alain
Publicado em 2007

Membrane RNAs in Bacteria

Por Sanders, Wes, Laederach, Alain
Publicado em 2011

Selecting against accidental RNA interactions

Por Corley, Meredith, Laederach, Alain
Publicado no eLife (2016)

Transcending the prediction paradigm: novel applications of SHAPE to RNA function and evolution

Por Kutchko, Katrina M., Laederach, Alain
Publicado no Wiley Interdiscip Rev RNA (2016)

Evaluating our ability to predict the structural disruption of RNA by SNPs

Por Ritz Justin, Martin Joshua S, Laederach Alain
Publicado em 2012-06-01

Exhaustive Enumeration of Kinetic Model Topologies for the Analysis of Time-Resolved RNA Folding

Por Martin, Joshua S., Simmons, Katrina, Laederach, Alain
Publicado em 2009

Evaluating our ability to predict the structural disruption of RNA by SNPs

Por Ritz, Justin, Martin, Joshua S, Laederach, Alain
Publicado em 2012

Evolutionary Evidence for Alternative Structure in RNA Sequence Co-variation

Por Ritz, Justin, Martin, Joshua S., Laederach, Alain
Publicado em 2013

Molecular biology: A second layer of information in RNA

Por Ramos, Silvia B. V., Laederach, Alain
Publicado em 2014

Increased Transcript Complexity in Genes Associated with Chronic Obstructive Pulmonary Disease

Por Lackey, Lela, McArthur, Evonne, Laederach, Alain
Publicado no PLoS One (2015)

Energy barriers, pathways and dynamics during folding of large, multi-domain RNAs

Por Shcherbakova, Inna, Mitra, Somdeb, Laederach, Alain, Brenowitz, Michael
Publicado em 2008

Disease-Associated Mutations That Alter the RNA Structural Ensemble

Por Halvorsen, Matthew, Martin, Joshua S., Broadaway, Sam, Laederach, Alain
Publicado em 2010

Rapid quantification and analysis of kinetic • OH radical footprinting data using SAFA

Por Simmons, Katrina, Martin, Joshua S., Shcherbakova, Inna, Laederach, Alain
Publicado em 2009

Mapping the Kinetic Barriers of a Large RNA Molecule's Folding Landscape

Por Schlatterer, Jörg C., Martin, Joshua S., Laederach, Alain, Brenowitz, Michael
Publicado em 2014

Local RNA structural changes induced by crystallization are revealed by SHAPE

Por Vicens, Quentin, Gooding, Anne R., Laederach, Alain, Cech, Thomas R.
Publicado em 2007

Evaluation of the information content of RNA structure mapping data for secondary structure prediction

Por Quarrier, Scott, Martin, Joshua S., Davis-Neulander, Lauren, Beauregard, Arthur, Laederach, Alain
Publicado em 2010

Detecting riboSNitches with RNA folding algorithms: a genome-wide benchmark

Por Corley, Meredith, Solem, Amanda, Qu, Kun, Chang, Howard Y., Laederach, Alain
Publicado no Nucleic Acids Res (2015)

The potential of the riboSNitch in personalized medicine

Por Solem, Amanda C., Halvorsen, Matthew, Ramos, Silvia B. V., Laederach, Alain
Publicado no Wiley Interdiscip Rev RNA (2015)

SAFA: Semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

Por DAS, RHIJU, LAEDERACH, ALAIN, PEARLMAN, SAMUEL M., HERSCHLAG, DANIEL, ALTMAN, RUSS B.
Publicado em 2005

Coplanar and coaxial orientations of RNA bases and helices

Por Laederach, Alain, Chan, Joseph M., Schwartzman, Armin, Willgohs, Eric, Altman, Russ B.
Publicado em 2007