A mutate-and-map strategy accurately infers the base pairs of a 35-nucleotide model RNA

מאת Kladwang, Wipapat, Cordero, Pablo, Das, Rhiju
יצא לאור 2011

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling

מאת Sripakdeevong, Parin, Kladwang, Wipapat, Das, Rhiju
יצא לאור 2011

Ultraviolet Shadowing of RNA Can Cause Significant Chemical Damage in Seconds

מאת Kladwang, Wipapat, Hum, Justine, Das, Rhiju
יצא לאור 2012

Allosteric mechanism of the V. vulnificus adenine riboswitch resolved by four-dimensional chemical mapping

מאת Tian, Siqi, Kladwang, Wipapat, Das, Rhiju
הוצא לאור ב eLife (2018)

High-throughput mutate-map-rescue evaluates SHAPE-directed RNA structure and uncovers excited states

מאת Tian, Siqi, Cordero, Pablo, Kladwang, Wipapat, Das, Rhiju
יצא לאור 2014

Blind tests of RNA nearest-neighbor energy prediction

מאת Chou, Fang-Chieh, Kladwang, Wipapat, Kappel, Kalli, Das, Rhiju
הוצא לאור ב Proc Natl Acad Sci U S A (2016)

Understanding the errors of SHAPE-directed RNA structure modeling

מאת Kladwang, Wipapat, VanLang, Christopher C., Cordero, Pablo, Das, Rhiju
יצא לאור 2011

Quantitative DMS mapping for automated RNA secondary structure inference

מאת Cordero, Pablo, Kladwang, Wipapat, VanLang, Christopher C., Das, Rhiju
יצא לאור 2012

A two-dimensional mutate-and-map strategy for non-coding RNA structure

מאת Kladwang, Wipapat, VanLang, Christopher C., Cordero, Pablo, Das, Rhiju
יצא לאור 2011

The Mutate-and-Map Protocol for Inferring Base Pairs in Structured RNA

מאת Cordero, Pablo, Kladwang, Wipapat, VanLang, Christopher C., Das, Rhiju
יצא לאור 2014

RNA structure inference through chemical mapping after accidental or intentional mutations

מאת Cheng, Clarence Y., Kladwang, Wipapat, Yesselman, Joseph D., Das, Rhiju
הוצא לאור ב Proc Natl Acad Sci U S A (2017)

RNA regulons in Hox 5′UTRs confer ribosome specificity to gene regulation

מאת Xue, Shifeng, Tian, Siqi, Fujii, Kotaro, Kladwang, Wipapat, Das, Rhiju, Barna, Maria
הוצא לאור ב Nature (2014)

Blind prediction of noncanonical RNA structure at atomic accuracy

מאת Watkins, Andrew M., Geniesse, Caleb, Kladwang, Wipapat, Zakrevsky, Paul, Jaeger, Luc, Das, Rhiju
הוצא לאור ב Sci Adv (2018)

Automated Design of Diverse Stand-Alone Riboswitches

מאת Wu, Michelle J., Andreasson, Johan O. L., Kladwang, Wipapat, Greenleaf, William, Das, Rhiju
הוצא לאור ב ACS Synth Biol (2019)

Consistent global structures of complex RNA states through multidimensional chemical mapping

מאת Cheng, Clarence Yu, Chou, Fang-Chieh, Kladwang, Wipapat, Tian, Siqi, Cordero, Pablo, Das, Rhiju
הוצא לאור ב eLife (2015)

Correction: Consistent global structures of complex RNA states through multidimensional chemical mapping

מאת Yu Cheng, Clarence, Chou, Fang-Chieh, Kladwang, Wipapat, Tian, Siqi, Cordero, Pablo, Das, Rhiju
הוצא לאור ב eLife (2015)

Standardization of RNA Chemical Mapping Experiments

מאת Kladwang, Wipapat, Mann, Thomas H., Becka, Alex, Tian, Siqi, Kim, Hanjoo, Yoon, Sungroh, Das, Rhiju
יצא לאור 2014

Anomalous reverse transcription through chemical modifications in polyadenosine stretches

מאת Kladwang, Wipapat, Topkar, Ved V., Liu, Bei, Rangan, Ramya, Hodges, Tracy L., Keane, Sarah C., al-Hashimi, Hashim, Das, Rhiju
הוצא לאור ב Biochemistry (2020)

RNA design rules from a massive open laboratory

מאת Lee, Jeehyung, Kladwang, Wipapat, Lee, Minjae, Cantu, Daniel, Azizyan, Martin, Kim, Hanjoo, Limpaecher, Alex, Gaikwad, Snehal, Yoon, Sungroh, Treuille, Adrien, Das, Rhiju
יצא לאור 2014

De novo 3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures

מאת Rangan, Ramya, Watkins, Andrew M, Chacon, Jose, Kretsch, Rachael, Kladwang, Wipapat, Zheludev, Ivan N, Townley, Jill, Rynge, Mats, Thain, Gregory, Das, Rhiju
הוצא לאור ב Nucleic Acids Res (2021)