RNA-Redesign: a web server for fixed-backbone 3D design of RNA

Por Yesselman, Joseph D., Das, Rhiju
Publicado no Nucleic Acids Res (2015)

Predicting Extreme pKa Shifts in Staphylococcal Nuclease Mutants with Constant pH Molecular Dynamics

Por Arthur, Evan J., Yesselman, Joseph D., Brooks, Charles L.
Publicado em 2011

Assessing the quality of absolute hydration free energies among CHARMM-compatible ligand parameterization schemes

Por Knight, Jennifer L., Yesselman, Joseph D., Brooks, Charles L.
Publicado no J Comput Chem (2013)

Primerize: automated primer assembly for transcribing non-coding RNA domains

Por Tian, Siqi, Yesselman, Joseph D., Cordero, Pablo, Das, Rhiju
Publicado no Nucleic Acids Res (2015)

RNA structure inference through chemical mapping after accidental or intentional mutations

Por Cheng, Clarence Y., Kladwang, Wipapat, Yesselman, Joseph D., Das, Rhiju
Publicado no Proc Natl Acad Sci U S A (2017)

Frequent Side Chain Methyl Carbon-Oxygen Hydrogen Bonding in Proteins Revealed by Computational and Stereochemical Analysis of Neutron Structures

Por Yesselman, Joseph D., Horowitz, Scott, Brooks, Charles L., Trievel, Raymond C.
Publicado no Proteins (2015)

Structural conservation in the template/pseudoknot domain of vertebrate telomerase RNA from teleost fish to human

Por Wang, Yaqiang, Yesselman, Joseph D., Zhang, Qi, Kang, Mijeong, Feigon, Juli
Publicado no Proc Natl Acad Sci U S A (2016)

Direct Evidence for Methyl Group Coordination by Carbon-Oxygen Hydrogen Bonds in the Lysine Methyltransferase SET7/9

Por Horowitz, Scott, Yesselman, Joseph D., Al-Hashimi, Hashim M., Trievel, Raymond C.
Publicado em 2011

MATCH: An Atom- Typing Toolset for Molecular Mechanics Force Fields

Por Yesselman, Joseph D., Price, Daniel J., Knight, Jennifer L., Brooks, Charles L.
Publicado em 2011

Updates to the RNA mapping database (RMDB), version 2

Por Yesselman, Joseph D, Tian, Siqi, Liu, Xin, Shi, Lei, Li, Jin Billy, Das, Rhiju
Publicado no Nucleic Acids Res (2018)

An active site rearrangement within the Tetrahymena group I ribozyme releases nonproductive interactions and allows formation of catalytic interactions

Por Sengupta, Raghuvir N., Van Schie, Sabine N.S., Giambaşu, George, Dai, Qing, Yesselman, Joseph D., York, Darrin, Piccirilli, Joseph A., Herschlag, Daniel
Publicado no RNA (2016)