Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions

gan Yang, Yuedong, Zhou, Yaoqi
Cyhoeddwyd 2008

Structure-based prediction of DNA-binding proteins by structural alignment and a volume-fraction corrected DFIRE-based energy function

gan Zhao, Huiying, Yang, Yuedong, Zhou, Yaoqi
Cyhoeddwyd 2010

Structure-based prediction of RNA-binding domains and RNA-binding sites and application to structural genomics targets

gan Zhao, Huiying, Yang, Yuedong, Zhou, Yaoqi
Cyhoeddwyd 2011

Highly accurate and high-resolution function prediction of RNA binding proteins by fold recognition and binding affinity prediction

gan Zhao, Huiying, Yang, Yuedong, Zhou, Yaoqi
Cyhoeddwyd 2011

Prediction of RNA binding proteins comes of age from low resolution to high resolution()

gan Zhao, Huiying, Yang, Yuedong, Zhou, Yaoqi
Cyhoeddwyd 2013

Grid-based prediction of torsion angle probabilities of protein backbone and its application to discrimination of protein intrinsic disorder regions and selection of model structur...

gan Gao, Jianzhao, Yang, Yuedong, Zhou, Yaoqi
Cyhoeddwyd yn BMC Bioinformatics (2018)

An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles

gan Xu, Beisi, Yang, Yuedong, Liang, Haojun, Zhou, Yaoqi
Cyhoeddwyd 2009

Predicting continuous local structure and the effect of its substitution for secondary structure in fragment-free protein structure prediction

gan Faraggi, Eshel, Yang, Yuedong, Zhang, Shesheng, Zhou, Yaoqi
Cyhoeddwyd 2009

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corres...

gan Yang, Yuedong, Faraggi, Eshel, Zhao, Huiying, Zhou, Yaoqi
Cyhoeddwyd 2011

A new size-independent score for pairwise protein structure alignment and its application to structure classification and nucleic-acid binding prediction

gan Yang, Yuedong, Zhan, Jian, Zhao, Huiying, Zhou, Yaoqi
Cyhoeddwyd 2012

SPOT-Seq-RNA: Predicting protein-RNA complex structure and RNA-binding function by fold recognition and binding affinity prediction

gan Yang, Yuedong, Zhao, Huiying, Wang, Jihua, Zhou, Yaoqi
Cyhoeddwyd 2014

Predicting DNA-Binding Proteins and Binding Residues by Complex Structure Prediction and Application to Human Proteome

gan Zhao, Huiying, Wang, Jihua, Zhou, Yaoqi, Yang, Yuedong
Cyhoeddwyd 2014

Characterization and Anti-Inflammatory Potential of an Exopolysaccharide from Submerged Mycelial Culture of Schizophyllum commune

gan Du, Bin, Yang, Yuedong, Bian, Zhaoxiang, Xu, Baojun
Cyhoeddwyd yn Front Pharmacol (2017)

Predicting the change of exon splicing caused by genetic variant using support vector regression

gan Chen, Ken, Lu, Yutong, Zhao, Huiying, Yang, Yuedong
Cyhoeddwyd yn Hum Mutat (2019)

Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map

gan Chen, Jianwen, Zheng, Shuangjia, Zhao, Huiying, Yang, Yuedong
Cyhoeddwyd yn J Cheminform (2021)

Improving computational protein design by using structure-derived sequence profile

gan Dai, Liang, Yang, Yuedong, Kim, Hyung Rae, Zhou, Yaoqi
Cyhoeddwyd 2010

Trends in template/fragment-free protein structure prediction

gan Zhou, Yaoqi, Duan, Yong, Yang, Yuedong, Faraggi, Eshel, Lei, Hongxing
Cyhoeddwyd 2010

SPINE X: Improving protein secondary structure prediction by multi-step learning coupled with prediction of solvent accessible surface area and backbone torsion angles

gan Faraggi, Eshel, Zhang, Tuo, Yang, Yuedong, Kurgan, Lukasz, Zhou, Yaoqi
Cyhoeddwyd 2011

Energy Functions in De Novo Protein Design: Current Challenges and Future Prospects

gan Li, Zhixiu, Yang, Yuedong, Zhan, Jian, Dai, Liang, Zhou, Yaoqi
Cyhoeddwyd 2013

Direct prediction of profiles of sequences compatible to a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles

gan Li, Zhixiu, Yang, Yuedong, Faraggi, Eshel, Zhan, Jian, Zhou, Yaoqi
Cyhoeddwyd 2014