Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers

by Zhang, Xiaoyang, Choi, Peter S., Francis, Joshua M., Imielinski, Marcin, Watanabe, Hideo, Cherniack, Andrew D., Meyerson, Matthew
Published in Nat Genet (2015)

RPC4046, A Novel Anti-interleukin-13 Antibody, Blocks IL-13 Binding to IL-13 α1 and α2 Receptors: A Randomized, Double-Blind, Placebo-Controlled, Dose-Escalation First-in-Human Stu...

by Tripp, Catherine S., Cuff, Carolyn, Campbell, Andrew L., Hendrickson, Barbara A., Voss, Jeff, Melim, Terry, Wu, Chengbin, Cherniack, Andrew D., Kim, Kenneth
Published in Adv Ther (2017)

G(α)11 Signaling through ARF6 Regulates F-Actin Mobilization and GLUT4 Glucose Transporter Translocation to the Plasma Membrane

by Bose, Avirup, Cherniack, Andrew D., Langille, Stephen E., Nicoloro, Sarah M. C., Buxton, Joanne M., Park, Jin G., Chawla, Anil, Czech, Michael P.
Published 2001

Genomic activation of PPARG reveals a candidate therapeutic axis in bladder cancer

by Goldstein, Jonathan T., Berger, Ashton C., Shih, Juliann, Duke, Fujiko F., Furst, Laura, Kwiatkowski, David J., Cherniack, Andrew D., Meyerson, Matthew, Strathdee, Craig A.
Published in Cancer Res (2017)

Ancestry-specific predisposing germline variants in cancer

by Oak, Ninad, Cherniack, Andrew D., Mashl, R. Jay, Hirsch, Fred R., Ding, Li, Beroukhim, Rameen, Gümüş, Zeynep H., Plon, Sharon E., Huang, Kuan-lin
Published in Genome Med (2020)

Suppression of oxidative metabolism and mitochondrial biogenesis by the transcriptional corepressor RIP140 in mouse adipocytes

by Powelka, Aimee M., Seth, Asha, Virbasius, Joseph V., Kiskinis, Evangelos, Nicoloro, Sarah M., Guilherme, Adilson, Tang, Xiaoqing, Straubhaar, Juerg, Cherniack, Andrew D., Parker, Malcolm G., Czech, Michael P.
Published 2005

A tumor suppressor complex with GAP activity for the Rag GTPases that signal amino acid sufficiency to mTORC1

by Bar-Peled, Liron, Chantranupong, Lynne, Cherniack, Andrew D., Chen, Walter W., Ottina, Kathleen A., Grabiner, Brian C., Spear, Eric D., Carter, Scott L., Meyerson, Matthew, Sabatini, David M.
Published 2013

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

by Way, Gregory P., Sanchez-Vega, Francisco, La, Konnor, Armenia, Joshua, Chatila, Walid K., Luna, Augustin, Sander, Chris, Cherniack, Andrew D., Mina, Marco, Ciriello, Giovanni, Schultz, Nikolaus, Sanchez, Yolanda, Greene, Casey S.
Published in Cell Rep (2018)

Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer

by Robertson, A. Gordon, Yau, Christina, Carrot-Zhang, Jian, Damrauer, Jeffrey S., Knijnenburg, Theo A., Chambwe, Nyasha, Hoadley, Katherine A., Kemal, Anab, Zenklusen, Jean C., Cherniack, Andrew D., Beroukhim, Rameen, Zhou, Wanding
Published in STAR Protoc (2021)

Genomic and Functional Approaches to Understanding Cancer Aneuploidy

by Taylor, Alison M., Shih, Juliann, Ha, Gavin, Gao, Galen F., Zhang, Xiaoyang, Berger, Ashton C., Schumacher, Steven E., Wang, Chen, Hu, Hai, Liu, Jianfang, Lazar, Alexander J., Cherniack, Andrew D., Beroukhim, Rameen, Meyerson, Matthew
Published in Cancer Cell (2018)

Genetic modifiers of EGFR dependence in non-small cell lung cancer

by Sharifnia, Tanaz, Rusu, Victor, Piccioni, Federica, Bagul, Mukta, Imielinski, Marcin, Cherniack, Andrew D., Pedamallu, Chandra Sekhar, Wong, Bang, Wilson, Frederick H., Garraway, Levi A., Altshuler, David, Golub, Todd R., Root, David E., Subramanian, Aravind, Meyerson, Matthew
Published in Proc Natl Acad Sci U S A (2014)

Near haploidization is a genomic hallmark which defines a molecular subgroup of giant cell glioblastoma

by Baker, Tiffany G, Alden, Jay, Dubuc, Adrian M, Welsh, Cynthia T, Znoyko, Iya, Cooley, Linda D, Farooqi, Midhat S, Schwartz, Stuart, Li, Yvonne Y, Cherniack, Andrew D, Lindhorst, Scott M, Gener, Melissa, Wolff, Daynna J, Meredith, David M
Published in Neurooncol Adv (2020)

Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth

by Holst, Frederik, Hoivik, Erling A., Gibson, William J., Taylor-Weiner, Amaro, Schumacher, Steven E., Asmann, Yan W., Grossmann, Patrick, Trovik, Jone, Necela, Brian M., Thompson, E. Aubrey, Meyerson, Matthew, Beroukhim, Rameen, Salvesen, Helga B., Cherniack, Andrew D.
Published in Sci Rep (2016)

Corrigendum: Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth

by Holst, Frederik, Hoivik, Erling A., Gibson, William J., Taylor-Weiner, Amaro, Schumacher, Steven E., Asmann, Yan W., Grossmann, Patrick, Trovik, Jone, Necela, Brian M., Thompson, E. Aubrey, Meyerson, Matthew, Beroukhim, Rameen, Salvesen, Helga B., Cherniack, Andrew D.
Published in Sci Rep (2016)

Corrigendum: Recurrent hormone-binding domain truncated ESR1 amplifications in primary endometrial cancers suggest their implication in hormone independent growth

by Holst, Frederik, Hoivik, Erling A., Gibson, William J., Taylor-Weiner, Amaro, Schumacher, Steven E., Asmann, Yan W., Grossmann, Patrick, Trovik, Jone, Necela, Brian M., Thompson, E. Aubrey, Meyerson, Matthew, Beroukhim, Rameen, Salvesen, Helga B., Cherniack, Andrew D.
Published in Sci Rep (2017)

BRCA1 ensures genome integrity by eliminating estrogen-induced pathological topoisomerase II–DNA complexes

by Sasanuma, Hiroyuki, Tsuda, Masataka, Morimoto, Suguru, Saha, Liton Kumar, Rahman, Md Maminur, Kiyooka, Yusuke, Fujiike, Haruna, Cherniack, Andrew D., Itou, Junji, Callen Moreu, Elsa, Toi, Masakazu, Nakada, Shinichiro, Tanaka, Hisashi, Tsutsui, Ken, Yamada, Shintaro, Nussenzweig, Andre, Takeda, Shunichi
Published in Proc Natl Acad Sci U S A (2018)

Loss of heterozygosity of essential genes represents a widespread class of potential cancer vulnerabilities

by Nichols, Caitlin A., Gibson, William J., Brown, Meredith S., Kosmicki, Jack A., Busanovich, John P., Wei, Hope, Urbanski, Laura M., Curimjee, Naomi, Berger, Ashton C., Gao, Galen F., Cherniack, Andrew D., Dhe-Paganon, Sirano, Paolella, Brenton R., Beroukhim, Rameen
Published in Nat Commun (2020)

Pan-Cancer Alterations of the MYC oncogene and its Proximal Network across The Cancer Genome Atlas

by Schaub, Franz X., Dhankani, Varsha, Berger, Ashton C., Trivedi, Mihir, Richardson, Anne B., Shaw, Reid, Zhao, Wei, Zhang, Xiaoyang, Ventura, Andrea, Liu, Yuexin, Ayer, Donald E., Hurlin, Peter J., Cherniack, Andrew D., Eisenman, Robert N., Bernard, Brady, Grandori, Carla
Published in Cell Syst (2018)

Identification of ADAR1 adenosine deaminase dependency in a subset of cancer cells

by Gannon, Hugh S., Zou, Tao, Kiessling, Michael K., Gao, Galen F., Cai, Diana, Choi, Peter S., Ivan, Alexandru P., Buchumenski, Ilana, Berger, Ashton C., Goldstein, Jonathan T., Cherniack, Andrew D., Vazquez, Francisca, Tsherniak, Aviad, Levanon, Erez Y., Hahn, William C., Meyerson, Matthew
Published in Nat Commun (2018)

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

by Liu, Jianfang, Lichtenberg, Tara, Hoadley, Katherine A., Poisson, Laila M., Lazar, Alexander J., Cherniack, Andrew D., Kovatich, Albert J., Benz, Christopher C., Levine, Douglas A., Lee, Adrian V., Omberg, Larsson, Wolf, Denise M., Shriver, Craig D., Thorsson, Vesteinn, Hu, Hai
Published in Cell (2018)