An Evaluation of Power and Type I Error of Single-Nucleotide Polymorphism Transmission/Disequilibrium–Based Statistical Methods under Different Family Structures, Missing Parental...

Por Nicodemus, Kristin K., Luna, Augustin, Shugart, Yin Yao
Publicado em 2007

SIRT1/PARP1 crosstalk: connecting DNA damage and metabolism

Por Luna, Augustin, Aladjem, Mirit I, Kohn, Kurt W
Publicado em 2013

PaxtoolsR: pathway analysis in R using Pathway Commons

Por Luna, Augustin, Babur, Özgün, Aksoy, Bülent Arman, Demir, Emek, Sander, Chris
Publicado no Bioinformatics (2016)

Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response

Por Luna, Augustin, McFadden, Geoffrey B., Aladjem, Mirit I., Kohn, Kurt W.
Publicado no PLoS Comput Biol (2015)

PathVisio-Validator: a rule-based validation plugin for graphical pathway notations

Por Chandan, Kumar, van Iersel, Martijn P., Aladjem, Mirit I., Kohn, Kurt W., Luna, Augustin
Publicado em 2012

PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs)

Por Luna, Augustin, Sunshine, Margot L., van Iersel, Martijn P., Aladjem, Mirit I., Kohn, Kurt W.
Publicado em 2011

Gene Expression Profiles of the NCI-60 Human Tumor Cell Lines Define Molecular Interaction Networks Governing Cell Migration Processes

Por Kohn, Kurt W., Zeeberg, Barry R., Reinhold, William C., Sunshine, Margot, Luna, Augustin, Pommier, Yves
Publicado em 2012

PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways

Por Fried, Jake Y., van Iersel, Martijn P., Aladjem, Mirit I., Kohn, Kurt W., Luna, Augustin
Publicado em 2013

A formal MIM specification and tools for the common exchange of MIM diagrams: an XML-Based format, an API, and a validation method

Por Luna, Augustin, Karac, Evrim I, Sunshine, Margot, Chang, Lucas, Nussinov, Ruth, Aladjem, Mirit I, Kohn, Kurt W
Publicado em 2011

A 5′ Promoter Region SNP in NRG1 is Associated with Schizophrenia Risk and Type III Isoform Expression

Por Nicodemus, Kristin K., Law, Amanda J., Luna, Augustin, Vakkalanka, Radhakrishna, Straub, Richard E., Kleinman, Joel E., Weinberger, Daniel R.
Publicado em 2009

Using drug response data to identify molecular effectors, and molecular “omic” data to identify candidate drugs in cancer

Por Reinhold, William C., Varma, Sudhir, Rajapakse, Vinodh N., Luna, Augustin, Sousa, Fabricio Garmus, Kohn, Kurt W., Pommier, Yves G.
Publicado no Hum Genet (2014)

rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R

Por Luna, Augustin, Rajapakse, Vinodh N., Sousa, Fabricio G., Gao, Jianjiong, Schultz, Nikolaus, Varma, Sudhir, Reinhold, William, Sander, Chris, Pommier, Yves
Publicado no Bioinformatics (2016)

A Landscape of Metabolic Variation Across Tumor Types

Por Reznik, Ed, Luna, Augustin, Aksoy, Bülent Arman, Liu, Eric Minwei, La, Konnor, Ostrovnaya, Irina, Creighton, Chad J., Hakimi, A. Ari, Sander, Chris
Publicado no Cell Syst (2018)

Alterations of DNA repair genes in the NCI-60 cell lines and their predictive value for anticancer drug activity

Por Sousa, Fabricio G., Matuo, Renata, Tang, Sai-Wen, Rajapakse, Vinodh N., Luna, Augustin, Sander, Chris, Varma, Sudhir, Simon, Paul H.G., Doroshow, James H., Reinhold, William C., Pommier, Yves
Publicado no DNA Repair (Amst) (2015)

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

Por Way, Gregory P., Sanchez-Vega, Francisco, La, Konnor, Armenia, Joshua, Chatila, Walid K., Luna, Augustin, Sander, Chris, Cherniack, Andrew D., Mina, Marco, Ciriello, Giovanni, Schultz, Nikolaus, Sanchez, Yolanda, Greene, Casey S.
Publicado no Cell Rep (2018)

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0

Por Rougny, Adrien, Touré, Vasundra, Moodie, Stuart, Balaur, Irina, Czauderna, Tobias, Borlinghaus, Hanna, Dogrusoz, Ugur, Mazein, Alexander, Dräger, Andreas, Blinov, Michael L., Villéger, Alice, Haw, Robin, Demir, Emek, Mi, Huaiyu, Sorokin, Anatoly, Schreiber, Falk, Luna, Augustin
Publicado no J Integr Bioinform (2019)

The NCI-60 Methylome and its Integration into CellMiner

Por Reinhold, William C., Varma, Sudhir, Sunshine, Margot, Rajapakse, Vinodh, Luna, Augustin, Kohn, Kurt W., Stevenson, Holly, Wang, Yonghong, Heyn, Holger, Nogales, Vanesa, Moran, Sebastian, Goldstein, David J., Doroshow, James H., Meltzer, Paul S., Esteller, Manel, Pommier, Yves
Publicado no Cancer Res (2016)

NRG1, ERBB4 and AKT1 Epistasis Increases Schizophrenia Risk and is Biologically Validated via Functional Neuroimaging in Healthy Controls

Por Nicodemus, Kristin K., Law, Amanda J., Radulescu, Eugenia, Luna, Augustin, Kolachana, Bhaskar, Vakkalanka, Radhakrishna, Rujescu, Dan, Giegling, Ina, Straub, Richard E., McGee, Kate, Gold, Bert, Dean, Michael, Muglia, Pierandrea, Callicott, Joseph H., Tan, Hao-Yang, Weinberger, Daniel R.
Publicado no Arch Gen Psychiatry (2010)

Software support for SBGN maps: SBGN-ML and LibSBGN

Por van Iersel, Martijn P., Villéger, Alice C., Czauderna, Tobias, Boyd, Sarah E., Bergmann, Frank T., Luna, Augustin, Demir, Emek, Sorokin, Anatoly, Dogrusoz, Ugur, Matsuoka, Yukiko, Funahashi, Akira, Aladjem, Mirit I., Mi, Huaiyu, Moodie, Stuart L., Kitano, Hiroaki, Le Novère, Nicolas, Schreiber, Falk
Publicado em 2012

CellMinerCDB for Integrative Cross-Database Genomics and Pharmacogenomics Analyses of Cancer Cell Lines

Por Rajapakse, Vinodh N., Luna, Augustin, Yamade, Mihoko, Loman, Lisa, Varma, Sudhir, Sunshine, Margot, Iorio, Francesco, Sousa, Fabricio G., Elloumi, Fathi, Aladjem, Mirit I., Thomas, Anish, Sander, Chris, Kohn, Kurt W., Benes, Cyril H., Garnett, Mathew, Reinhold, William C., Pommier, Yves
Publicado no iScience (2018)