SoupX removes ambient RNA contamination from droplet-based single-cell RNA sequencing data

av Young, Matthew D, Behjati, Sam
I publikationen Gigascience (2020)

From RNA-seq reads to differential expression results

av Oshlack, Alicia, Robinson, Mark D, Young, Matthew D
Publicerad 2010

The interplay of long non-coding RNAs and MYC in cancer

av Hamilton, Michael J., Young, Matthew D., Sauer, Silvia, Martinez, Ernest
I publikationen AIMS Biophys (2015)

Gene ontology analysis for RNA-seq: accounting for selection bias

av Young, Matthew D, Wakefield, Matthew J, Smyth, Gordon K, Oshlack, Alicia
Publicerad 2010

Recurrent histone mutations in T‐cell acute lymphoblastic leukaemia

av Collord, Grace, Martincorena, Inigo, Young, Matthew D., Foroni, Letizia, Bolli, Niccolo, Stratton, Michael R., Vassiliou, George S., Campbell, Peter J., Behjati, Sam
I publikationen Br J Haematol (2018)

ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity

av Young, Matthew D., Willson, Tracy A., Wakefield, Matthew J., Trounson, Evelyn, Hilton, Douglas J., Blewitt, Marnie E., Oshlack, Alicia, Majewski, Ian J.
Publicerad 2011

In Vivo Caprine Model for Osteomyelitis and Evaluation of Biofilm-Resistant Intramedullary Nails

av Tran, Nhiem, Tran, Phong A., Jarrell, John D., Engiles, Julie B., Thomas, Nathan P., Young, Matthew D., Hayda, Roman A., Born, Christopher T.
Publicerad 2013

Inherent mosaicism and extensive mutation of human placentas

av Coorens, Tim H. H., Oliver, Thomas R. W., Sanghvi, Rashesh, Sovio, Ulla, Cook, Emma, Vento-Tormo, Roser, Haniffa, Muzlifah, Young, Matthew D., Rahbari, Raheleh, Sebire, Neil, Campbell, Peter J., Charnock-Jones, D. Stephen, Smith, Gordon C. S., Behjati, Sam
I publikationen Nature (2021)

Single-cell atlas of the first intra-mammalian developmental stage of the human parasite Schistosoma mansoni

av Diaz Soria, Carmen Lidia, Lee, Jayhun, Chong, Tracy, Coghlan, Avril, Tracey, Alan, Young, Matthew D., Andrews, Tallulah, Hall, Christopher, Ng, Bee Ling, Rawlinson, Kate, Doyle, Stephen R., Leonard, Steven, Lu, Zhigang, Bennett, Hayley M., Rinaldi, Gabriel, Newmark, Phillip A., Berriman, Matthew
I publikationen Nat Commun (2020)

Recurrent rearrangements of FOS and FOSB define osteoblastoma

av Fittall, Matthew W., Mifsud, William, Pillay, Nischalan, Ye, Hongtao, Strobl, Anna-Christina, Verfaillie, Annelien, Demeulemeester, Jonas, Zhang, Lei, Berisha, Fitim, Tarabichi, Maxime, Young, Matthew D., Miranda, Elena, Tarpey, Patrick S., Tirabosco, Roberto, Amary, Fernanda, Grigoriadis, Agamemnon E., Stratton, Michael R., Van Loo, Peter, Antonescu, Cristina R., Campbell, Peter J., Flanagan, Adrienne M., Behjati, Sam
I publikationen Nat Commun (2018)

Single-cell sequencing reveals clonal expansions of pro-inflammatory synovial CD8 T cells expressing tissue-homing receptors in psoriatic arthritis

av Penkava, Frank, Velasco-Herrera, Martin Del Castillo, Young, Matthew D., Yager, Nicole, Nwosu, Lilian N., Pratt, Arthur G., Lara, Alicia Lledo, Guzzo, Charlotte, Maroof, Ash, Mamanova, Lira, Cole, Suzanne, Efremova, Mirjana, Simone, Davide, Filer, Andrew, Brown, Chrysothemis C., Croxford, Andrew L., Isaacs, John D., Teichmann, Sarah, Bowness, Paul, Behjati, Sam, Hussein Al-Mossawi, M.
I publikationen Nat Commun (2020)

Somatic mutations and single-cell transcriptomes reveal the root of malignant rhabdoid tumours

av Custers, Lars, Khabirova, Eleonora, Coorens, Tim H. H., Oliver, Thomas R. W., Calandrini, Camilla, Young, Matthew D., Vieira Braga, Felipe A., Ellis, Peter, Mamanova, Lira, Segers, Heidi, Maat, Arie, Kool, Marcel, Hoving, Eelco W., van den Heuvel-Eibrink, Marry M., Nicholson, James, Straathof, Karin, Hook, Liz, de Krijger, Ronald R., Trayers, Claire, Allinson, Kieren, Behjati, Sam, Drost, Jarno
I publikationen Nat Commun (2021)

The driver landscape of sporadic chordoma

av Tarpey, Patrick S., Behjati, Sam, Young, Matthew D., Martincorena, Inigo, Alexandrov, Ludmil B., Farndon, Sarah J., Guzzo, Charlotte, Hardy, Claire, Latimer, Calli, Butler, Adam P., Teague, Jon W., Shlien, Adam, Futreal, P. Andrew, Shah, Sohrab, Bashashati, Ali, Jamshidi, Farzad, Nielsen, Torsten O., Huntsman, David, Baumhoer, Daniel, Brandner, Sebastian, Wunder, Jay, Dickson, Brendan, Cogswell, Patricia, Sommer, Josh, Phillips, Joanna J., Amary, M. Fernanda, Tirabosco, Roberto, Pillay, Nischalan, Yip, Stephen, Stratton, Michael R., Flanagan, Adrienne M., Campbell, Peter J.
I publikationen Nat Commun (2017)

Recurrent mutation of IGF signalling genes and distinct patterns of genomic rearrangement in osteosarcoma

av Behjati, Sam, Tarpey, Patrick S., Haase, Kerstin, Ye, Hongtao, Young, Matthew D., Alexandrov, Ludmil B., Farndon, Sarah J., Collord, Grace, Wedge, David C., Martincorena, Inigo, Cooke, Susanna L., Davies, Helen, Mifsud, William, Lidgren, Mathias, Martin, Sancha, Latimer, Calli, Maddison, Mark, Butler, Adam P., Teague, Jon W., Pillay, Nischalan, Shlien, Adam, McDermott, Ultan, Futreal, P. Andrew, Baumhoer, Daniel, Zaikova, Olga, Bjerkehagen, Bodil, Myklebost, Ola, Amary, M. Fernanda, Tirabosco, Roberto, Van Loo, Peter, Stratton, Michael R., Flanagan, Adrienne M., Campbell, Peter J.
I publikationen Nat Commun (2017)

An integrated genomic analysis of anaplastic meningioma identifies prognostic molecular signatures

av Collord, Grace, Tarpey, Patrick, Kurbatova, Natalja, Martincorena, Inigo, Moran, Sebastian, Castro, Manuel, Nagy, Tibor, Bignell, Graham, Maura, Francesco, Young, Matthew D., Berna, Jorge, Tubio, Jose M. C., McMurran, Chris E., Young, Adam M. H., Sanders, Mathijs, Noorani, Imran, Price, Stephen J., Watts, Colin, Leipnitz, Elke, Kirsch, Matthias, Schackert, Gabriele, Pearson, Danita, Devadass, Abel, Ram, Zvi, Collins, V. Peter, Allinson, Kieren, Jenkinson, Michael D., Zakaria, Rasheed, Syed, Khaja, Hanemann, C. Oliver, Dunn, Jemma, McDermott, Michael W., Kirollos, Ramez W., Vassiliou, George S., Esteller, Manel, Behjati, Sam, Brazma, Alvis, Santarius, Thomas, McDermott, Ultan
I publikationen Sci Rep (2018)

Rearrangement bursts generate canonical gene fusions in bone and soft tissue tumors

av Anderson, Nathaniel D, de Borja, Richard, Young, Matthew D, Fuligni, Fabio, Rosic, Andrej, Roberts, Nicola D, Hajjar, Simon, Layeghifard, Mehdi, Novokmet, Ana, Kowalski, Paul E, Anaka, Matthew, Davidson, Scott, Zarrei, Mehdi, Said, Badr Id, Schreiner, L. Christine, Marchand, Remi, Sitter, Joseph, Gogkoz, Nalan, Brunga, Ledia, Graham, Garrett T, Fullam, Anthony, Pillay, Nischalan, Toretsky, Jeffrey A, Yoshida, Akihiko, Shibata, Tatsuhiro, Metzler, Markus, Somers, Gino R, Scherer, Stephen W, Flanagan, Adrienne M, Campbell, Peter J, Schiffman, Joshua D, Shago, Mary, Alexandrov, Ludmil B, Wunder, Jay S, Andrulis, Irene L, Malkin, David, Behjati, Sam, Shlien, Adam
I publikationen Science (2018)

Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumors

av Young, Matthew D, Mitchell, Thomas J, Vieira Braga, Felipe A, Tran, Maxine GB, Stewart, Benjamin J, Ferdinand, John R, Collord, Grace, Botting, Rachel A, Popescu, Dorin-Mirel, Loudon, Kevin W, Vento-Tormo, Roser, Stephenson, Emily, Cagan, Alex, Farndon, Sarah, Del Castillo Velasco-Herrera, Martin, Guzzo, Charlotte, Richoz, Nathan, Mamanova, Lira, Aho, Tevita, Armitage, James N, Riddick, Antony CP, Mushtaq, Imran, Farrell, Stephen, Rampling, Dyanne, Nicholson, James, Filby, Andrew, Burge, Johanna, Lisgo, Steven, Maxwell, Patrick H, Lindsay, Susan, Warren, Anne Y, Stewart, Grant D, Sebire, Neil, Coleman, Nicholas, Haniffa, Muzlifah, Teichmann, Sarah A, Clatworthy, Menna, Behjati, Sam
I publikationen Science (2018)

Embryonal precursors of Wilms tumor

av Coorens, Tim HH, Treger, Taryn D, Al-Saadi, Reem, Moore, Luiza, Tran, Maxine GB, Mitchell, Thomas J, Tugnait, Suzanne, Thevanesan, Christine, Young, Matthew D, Oliver, Thomas RW, Oostveen, Minou, Collord, Grace, Tarpey, Patrick S, Cagan, Alex, Hooks, Yvette, Brougham, Mark, Reynolds, Ben C, Barone, Giuseppe, Anderson, John, Jorgensen, Mette, Burke, GA Amos, Visser, Johannes, Nicholson, James C, Smeulders, Naima, Mushtaq, Imran, Stewart, Grant D, Campbell, Peter J, Wedge, David C, Martincorena, Iñigo, Rampling, Dyanne, Hook, Liz, Warren, Anne Y, Coleman, Nicholas, Chowdhury, Tanzina, Sebire, Neil, Drost, Jarno, Saeb-Parsy, Kourosh, Stratton, Michael R, Straathof, Karin, Pritchard-Jones, Kathy, Behjati, Sam
I publikationen Science (2019)

Spatio-temporal immune zonation of the human kidney

av Stewart, Benjamin J, Ferdinand, John R, Young, Matthew D, Mitchell, Thomas J, Loudon, Kevin W, Riding, Alexandra M, Richoz, Nathan, Frazer, Gordon L, Staniforth, Joy UL, Braga, Felipe A Vieira, Botting, Rachel A, Popescu, Dorin-Mirel, Vento-Tormo, Roser, Stephenson, Emily, Cagan, Alex, Farndon, Sarah J, Polanski, Krzysztof, Efremova, Mirjana, Green, Kile, Velasco-Herrera, Martin Del Castillo, Guzzo, Charlotte, Collord, Grace, Mamanova, Lira, Aho, Tevita, Armitage, James N, Riddick, Antony CP, Mushtaq, Imran, Farrell, Stephen, Rampling, Dyanne, Nicholson, James, Filby, Andrew, Burge, Johanna, Lisgo, Steven, Lindsay, Susan, Bajenoff, Marc, Warren, Anne Y, Stewart, Grant D, Sebire, Neil, Coleman, Nicholas, Haniffa, Muzlifah, Teichmann, Sarah A, Behjati, Sam, Clatworthy, Menna R
I publikationen Science (2019)

Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell

av Kildisiute, Gerda, Kholosy, Waleed M., Young, Matthew D., Roberts, Kenny, Elmentaite, Rasa, van Hooff, Sander R., Pacyna, Clarissa N., Khabirova, Eleonora, Piapi, Alice, Thevanesan, Christine, Bugallo-Blanco, Eva, Burke, Christina, Mamanova, Lira, Keller, Kaylee M., Langenberg-Ververgaert, Karin P.S., Lijnzaad, Philip, Margaritis, Thanasis, Holstege, Frank C.P., Tas, Michelle L., Wijnen, Marc H.W.A., van Noesel, Max M., del Valle, Ignacio, Barone, Giuseppe, van der Linden, Reinier, Duncan, Catriona, Anderson, John, Achermann, John C., Haniffa, Muzlifah, Teichmann, Sarah A., Rampling, Dyanne, Sebire, Neil J., He, Xiaoling, de Krijger, Ronald R., Barker, Roger A., Meyer, Kerstin B., Bayraktar, Omer, Straathof, Karin, Molenaar, Jan J., Behjati, Sam
I publikationen Sci Adv (2021)