Defining the clinical genomic landscape for real-world precision oncology

著者: Beer, Philip A., Cooke, Susanna L., Chang, David K., Biankin, Andrew V.
出版年 Genomics (2020)

High-resolution array CGH clarifies events occurring on 8p in carcinogenesis

著者: Cooke, Susanna L, Pole, Jessica CM, Chin, Suet-Feung, Ellis, Ian O, Caldas, Carlos, Edwards, Paul AW
出版事項 2008

Genomic analysis of genetic heterogeneity and evolution in high-grade serous ovarian carcinoma

著者: Cooke, Susanna L, Ng, Charlotte KY, Melnyk, Nataliya, Garcia, Maria J, Hardcastle, Tom, Temple, Jillian, Langdon, Simon, Huntsman, David, Brenton, James D
出版事項 2010

C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency

著者: Meier, Bettina, Cooke, Susanna L., Weiss, Joerg, Bailly, Aymeric P., Alexandrov, Ludmil B., Marshall, John, Raine, Keiran, Maddison, Mark, Anderson, Elizabeth, Stratton, Michael R., Gartner, Anton, Campbell, Peter J.
出版事項 2014

The Specificity of the FOXL2 c.402C>G Somatic Mutation: A Survey of Solid Tumors

著者: Schrader, Kasmintan A., Gorbatcheva, Bella, Senz, Janine, Heravi-Moussavi, Alireza, Melnyk, Nataliya, Salamanca, Clara, Maines-Bandiera, Sarah, Cooke, Susanna L., Leung, Peter, Brenton, James D., Gilks, C. Blake, Monahan, John, Huntsman, David G.
出版事項 2009

Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes

著者: Schulte, Ina, Batty, Elizabeth M, Pole, Jessica CM, Blood, Katherine A, Mo, Steven, Cooke, Susanna L, Ng, Charlotte, Howe, Kevin L, Chin, Suet-Feung, Brenton, James D, Caldas, Carlos, Howarth, Karen D, Edwards, Paul AW
出版事項 2012

NRG1 fusions in breast cancer

著者: Howarth, Karen D., Mirza, Tashfina, Cooke, Susanna L., Chin, Suet-Feung, Pole, Jessica C., Turro, Ernest, Eldridge, Matthew D., Garcia, Raquel Manzano, Rueda, Oscar M., Boursnell, Chris, Abraham, Jean E., Caldas, Carlos, Edwards, Paul A. W.
出版年 Breast Cancer Res (2021)

Spatial and Temporal Heterogeneity in High-Grade Serous Ovarian Cancer: A Phylogenetic Analysis

著者: Schwarz, Roland F., Ng, Charlotte K. Y., Cooke, Susanna L., Newman, Scott, Temple, Jillian, Piskorz, Anna M., Gale, Davina, Sayal, Karen, Murtaza, Muhammed, Baldwin, Peter J., Rosenfeld, Nitzan, Earl, Helena M., Sala, Evis, Jimenez-Linan, Mercedes, Parkinson, Christine A., Markowetz, Florian, Brenton, James D.
出版年 PLoS Med (2015)

Targeted sequencing in DLBCL, molecular subtypes, and outcomes: a Haematological Malignancy Research Network report

著者: Lacy, Stuart E., Barrans, Sharon L., Beer, Philip A., Painter, Daniel, Smith, Alexandra G., Roman, Eve, Cooke, Susanna L., Ruiz, Camilo, Glover, Paul, Van Hoppe, Suzan J. L., Webster, Nichola, Campbell, Peter J., Tooze, Reuben M., Patmore, Russell, Burton, Cathy, Crouch, Simon, Hodson, Daniel J.
出版年 Blood (2020)

Genetic modification of primary human B cells to model high-grade lymphoma

著者: Caeser, Rebecca, Di Re, Miriam, Krupka, Joanna A., Gao, Jie, Lara-Chica, Maribel, Dias, João M. L., Cooke, Susanna L., Fenner, Rachel, Usheva, Zelvera, Runge, Hendrik F. P., Beer, Philip A., Eldaly, Hesham, Pak, Hyo-Kyung, Park, Chan-Sik, Vassiliou, George S., Huntly, Brian J. P., Mupo, Annalisa, Bashford-Rogers, Rachael J. M., Hodson, Daniel J.
出版年 Nat Commun (2019)

Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes

著者: McBride, David J, Etemadmoghadam, Dariush, Cooke, Susanna L, Alsop, Kathryn, George, Joshy, Butler, Adam, Cho, Juok, Galappaththige, Danushka, Greenman, Chris, Howarth, Karen D, Lau, King W, Ng, Charlotte K, Raine, Keiran, Teague, Jon, Wedge, David C, Cancer Study Group, Australian Ovarian, Caubit, Xavier, Stratton, Michael R, Brenton, James D, Campbell, Peter J, Futreal, P Andrew, Bowtell, David DL
出版事項 2012

Single-cell paired-end genome sequencing reveals structural variation per cell cycle

著者: Voet, Thierry, Kumar, Parveen, Van Loo, Peter, Cooke, Susanna L., Marshall, John, Lin, Meng-Lay, Zamani Esteki, Masoud, Van der Aa, Niels, Mateiu, Ligia, McBride, David J., Bignell, Graham R., McLaren, Stuart, Teague, Jon, Butler, Adam, Raine, Keiran, Stebbings, Lucy A., Quail, Michael A., D’Hooghe, Thomas, Moreau, Yves, Futreal, P. Andrew, Stratton, Michael R., Vermeesch, Joris R., Campbell, Peter J.
出版事項 2013

Distinct H3F3A and H3F3B driver variants define chondroblastoma and giant cell tumour of bone

著者: Behjati, Sam, Tarpey, Patrick S, Presneau, Nadège, Scheipl, Susanne, Pillay, Nischalan, Van Loo, Peter, Wedge, David C, Cooke, Susanna L, Gundem, Gunes, Davies, Helen, Nik-Zainal, Serena, Martin, Sancha, McLaren, Stuart, Goodie, Victoria, Robinson, Ben, Butler, Adam, Teague, Jon W, Halai, Dina, Khatri, Bhavisha, Myklebost, Ola, Baumhoer, Daniel, Jundt, Gernot, Hamoudi, Rifat, Tirabosco, Roberto, Amary, M Fernanda, Futreal, P Andrew, Stratton, Michael R, Campbell, Peter J, Flanagan, Adrienne M
出版事項 2013

Mutational signatures of ionizing radiation in second malignancies

著者: Behjati, Sam, Gundem, Gunes, Wedge, David C., Roberts, Nicola D., Tarpey, Patrick S., Cooke, Susanna L., Van Loo, Peter, Alexandrov, Ludmil B., Ramakrishna, Manasa, Davies, Helen, Nik-Zainal, Serena, Hardy, Claire, Latimer, Calli, Raine, Keiran M., Stebbings, Lucy, Menzies, Andy, Jones, David, Shepherd, Rebecca, Butler, Adam P., Teague, Jon W., Jorgensen, Mette, Khatri, Bhavisha, Pillay, Nischalan, Shlien, Adam, Futreal, P. Andrew, Badie, Christophe, McDermott, Ultan, Bova, G. Steven, Richardson, Andrea L., Flanagan, Adrienne M., Stratton, Michael R., Campbell, Peter J.
出版年 Nat Commun (2016)

Recurrent mutation of IGF signalling genes and distinct patterns of genomic rearrangement in osteosarcoma

著者: Behjati, Sam, Tarpey, Patrick S., Haase, Kerstin, Ye, Hongtao, Young, Matthew D., Alexandrov, Ludmil B., Farndon, Sarah J., Collord, Grace, Wedge, David C., Martincorena, Inigo, Cooke, Susanna L., Davies, Helen, Mifsud, William, Lidgren, Mathias, Martin, Sancha, Latimer, Calli, Maddison, Mark, Butler, Adam P., Teague, Jon W., Pillay, Nischalan, Shlien, Adam, McDermott, Ultan, Futreal, P. Andrew, Baumhoer, Daniel, Zaikova, Olga, Bjerkehagen, Bodil, Myklebost, Ola, Amary, M. Fernanda, Tirabosco, Roberto, Van Loo, Peter, Stratton, Michael R., Flanagan, Adrienne M., Campbell, Peter J.
出版年 Nat Commun (2017)

RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia

著者: Papaemmanuil, Elli, Rapado, Inmaculada, Li, Yilong, Potter, Nicola E, Wedge, David C, Tubio, Jose, Alexandrov, Ludmil B, Van Loo, Peter, Cooke, Susanna L, Marshall, John, Martincorena, Inigo, Hinton, Jonathan, Gundem, Gunes, van Delft, Frederik W, Nik-Zainal, Serena, Jones, David R, Ramakrishna, Manasa, Titley, Ian, Stebbings, Lucy, Leroy, Catherine, Menzies, Andrew, Gamble, John, Robinson, Ben, Mudie, Laura, Raine, Keiran, O’Meara, Sarah, Teague, Jon W, Butler, Adam P, Cazzaniga, Giovanni, Biondi, Andrea, Zuna, Jan, Kempski, Helena, Muschen, Markus, Ford, Anthony M, Stratton, Michael R, Greaves, Mel, Campbell, Peter J
出版事項 2014

Direct Transcriptional Consequences of Somatic Mutation in Breast Cancer

著者: Shlien, Adam, Raine, Keiran, Fuligni, Fabio, Arnold, Roland, Nik-Zainal, Serena, Dronov, Serge, Mamanova, Lira, Rosic, Andrej, Ju, Young Seok, Cooke, Susanna L., Ramakrishna, Manasa, Papaemmanuil, Elli, Davies, Helen R., Tarpey, Patrick S., Van Loo, Peter, Wedge, David C., Jones, David R., Martin, Sancha, Marshall, John, Anderson, Elizabeth, Hardy, Claire, Barbashina, Violetta, Aparicio, Samuel A.J.R., Sauer, Torill, Garred, Øystein, Vincent-Salomon, Anne, Mariani, Odette, Boyault, Sandrine, Fatima, Aquila, Langerød, Anita, Borg, Åke, Thomas, Gilles, Richardson, Andrea L., Børresen-Dale, Anne-Lise, Polyak, Kornelia, Stratton, Michael R., Campbell, Peter J.
出版年 Cell Rep (2016)

Processed pseudogenes acquired somatically during cancer development

著者: Cooke, Susanna L., Shlien, Adam, Marshall, John, Pipinikas, Christodoulos P., Martincorena, Inigo, Tubio, Jose M.C., Li, Yilong, Menzies, Andrew, Mudie, Laura, Ramakrishna, Manasa, Yates, Lucy, Davies, Helen, Bolli, Niccolo, Bignell, Graham R., Tarpey, Patrick S., Behjati, Sam, Nik-Zainal, Serena, Papaemmanuil, Elli, Teixeira, Vitor H., Raine, Keiran, O’Meara, Sarah, Dodoran, Maryam S., Teague, Jon W., Butler, Adam P., Iacobuzio-Donahue, Christine, Santarius, Thomas, Grundy, Richard G., Malkin, David, Greaves, Mel, Munshi, Nikhil, Flanagan, Adrienne M., Bowtell, David, Martin, Sancha, Larsimont, Denis, Reis-Filho, Jorge S., Boussioutas, Alex, Taylor, Jack A., Hayes, Neil D., Janes, Sam M., Futreal, P. Andrew, Stratton, Michael R., McDermott, Ultan, Campbell, Peter J.
出版事項 2014

Recurrent PTPRB and PLCG1 mutations in angiosarcoma

著者: Behjati, Sam, Tarpey, Patrick S, Sheldon, Helen, Martincorena, Inigo, Van Loo, Peter, Gundem, Gunes, Wedge, David C, Ramakrishna, Manasa, Cooke, Susanna L, Pillay, Nischalan, Vollan, Hans Kristian M, Papaemmanuil, Elli, Koss, Hans, Bunney, Tom D, Hardy, Claire, Joseph, Olivia R, Martin, Sancha, Mudie, Laura, Butler, Adam, Teague, Jon W, Patil, Meena, Steers, Graham, Cao, Yu, Gumbs, Curtis, Ingram, Davis, Lazar, Alexander J, Little, Latasha, Mahadeshwar, Harshad, Protopopov, Alexei, Al Sannaa, Ghadah A, Seth, Sahil, Song, Xingzhi, Tang, Jiabin, Zhang, Jianhua, Ravi, Vinod, Torres, Keila E, Khatri, Bhavisha, Halai, Dina, Roxanis, Ioannis, Baumhoer, Daniel, Tirabosco, Roberto, Amary, M Fernanda, Boshoff, Chris, McDermott, Ultan, Katan, Matilda, Stratton, Michael R, Futreal, P Andrew, Flanagan, Adrienne M, Harris, Adrian, Campbell, Peter J
出版事項 2014

The Life History of 21 Breast Cancers

著者: Nik-Zainal, Serena, Van Loo, Peter, Wedge, David C., Alexandrov, Ludmil B., Greenman, Christopher D., Lau, King Wai, Raine, Keiran, Jones, David, Marshall, John, Ramakrishna, Manasa, Shlien, Adam, Cooke, Susanna L., Hinton, Jonathan, Menzies, Andrew, Stebbings, Lucy A., Leroy, Catherine, Jia, Mingming, Rance, Richard, Mudie, Laura J., Gamble, Stephen J., Stephens, Philip J., McLaren, Stuart, Tarpey, Patrick S., Papaemmanuil, Elli, Davies, Helen R., Varela, Ignacio, McBride, David J., Bignell, Graham R., Leung, Kenric, Butler, Adam P., Teague, Jon W., Martin, Sancha, Jönsson, Goran, Mariani, Odette, Boyault, Sandrine, Miron, Penelope, Fatima, Aquila, Langerød, Anita, Aparicio, Samuel A.J.R., Tutt, Andrew, Sieuwerts, Anieta M., Borg, Åke, Thomas, Gilles, Salomon, Anne Vincent, Richardson, Andrea L., Børresen-Dale, Anne-Lise, Futreal, P. Andrew, Stratton, Michael R., Campbell, Peter J.
出版事項 2012