CHETAH: a selective, hierarchical cell type identification method for single-cell RNA sequencing

af de Kanter, Jurrian K, Lijnzaad, Philip, Candelli, Tito, Margaritis, Thanasis, Holstege, Frank C P
Udgivet i Nucleic Acids Res (2019)

Adaptable gene-specific dye bias correction for two-channel DNA microarrays

af Margaritis, Thanasis, Lijnzaad, Philip, van Leenen, Dik, Bouwmeester, Diane, Kemmeren, Patrick, van Hooff, Sander R, Holstege, Frank CP
Udgivet 2009

H2B ubiquitylation controls the formation of export-competent mRNP

af Vitaliano-Prunier, Adeline, Babour, Anna, Hérissant, Lucas, Apponi, Luciano, Margaritis, Thanasis, Holstege, Frank C.P., Corbett, Anita H., Gwizdek, Carole, Dargemont, Catherine
Udgivet 2012

Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis

af Apweiler Eva, Sameith Katrin, Margaritis Thanasis, Brabers Nathalie, van de Pasch Loes, Bakker Linda V, van Leenen Dik, Holstege Frank CP, Kemmeren Patrick
Udgivet 2012-06-01

Yeast glucose pathways converge on the transcriptional regulation of trehalose biosynthesis

af Apweiler, Eva, Sameith, Katrin, Margaritis, Thanasis, Brabers, Nathalie, van de Pasch, Loes, Bakker, Linda V, van Leenen, Dik, Holstege, Frank CP, Kemmeren, Patrick
Udgivet 2012

Two Distinct Repressive Mechanisms for Histone 3 Lysine 4 Methylation through Promoting 3′-End Antisense Transcription

af Margaritis, Thanasis, Oreal, Vincent, Brabers, Nathalie, Maestroni, Laetitia, Vitaliano-Prunier, Adeline, Benschop, Joris J., van Hooff, Sander, van Leenen, Dik, Dargemont, Catherine, Géli, Vincent, Holstege, Frank C. P.
Udgivet 2012

Cell cycle population effects in perturbation studies

af O'Duibhir, Eoghan, Lijnzaad, Philip, Benschop, Joris J, Lenstra, Tineke L, van Leenen, Dik, Groot Koerkamp, Marian JA, Margaritis, Thanasis, Brok, Mariel O, Kemmeren, Patrick, Holstege, Frank CP
Udgivet i Mol Syst Biol (2014)

Coordination of Cell Cycle Progression and Mitotic Spindle Assembly Involves Histone H3 Lysine 4 Methylation by Set1/COMPASS

af Beilharz, Traude H., Harrison, Paul F., Miles, Douglas Maya, See, Michael Ming, Le, Uyen Minh Merry, Kalanon, Ming, Curtis, Melissa Jane, Hasan, Qambar, Saksouk, Julie, Margaritis, Thanasis, Holstege, Frank, Geli, Vincent, Dichtl, Bernhard
Udgivet i Genetics (2017)

Single-cell atlas of developing murine adrenal gland reveals relation of Schwann cell precursor signature to neuroblastoma phenotype

af Hanemaaijer, Evelyn S., Margaritis, Thanasis, Sanders, Karin, Bos, Frank L., Candelli, Tito, Al-Saati, Hanin, van Noesel, Max M., Meyer-Wentrup, Friederike A. G., van de Wetering, Marc, Holstege, Frank C. P., Clevers, Hans
Udgivet i Proc Natl Acad Sci U S A (2021)

The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation

af Gómez-Herreros, Fernando, Margaritis, Thanasis, Rodríguez-Galán, Olga, Pelechano, Vicent, Begley, Victoria, Millán-Zambrano, Gonzalo, Morillo-Huesca, Macarena, Muñoz-Centeno, Mari Cruz, Pérez-Ortín, José E., de la Cruz, Jesús, Holstege, Frank C. P., Chávez, Sebastián
Udgivet i Nucleic Acids Res (2017)

The specificity and topology of chromatin interaction pathways in yeast

af Lenstra, Tineke L., Benschop, Joris J., Kim, TaeSoo, Schulze, Julia M., Brabers, Nathalie A.C.H., Margaritis, Thanasis, van de Pasch, Loes A.L., van Heesch, Sebastiaan A.A.C., Brok, Mariel O., Koerkamp, Marian J.A. Groot, Ko, Cheuk, van Leenen, Dik, Sameith, Katrin, van Hooff, Sander R., Lijnzaad, Philip, Kemmeren, Patrick, Hentrich, Thomas, Kobor, Michael S., Buratowski, Stephen, Holstege, Frank C.P.
Udgivet i Mol Cell (2011)

Functional Overlap and Regulatory Links Shape Genetic Interactions between Signaling Pathways

af van Wageningen, Sake, Kemmeren, Patrick, Lijnzaad, Philip, Margaritis, Thanasis, Benschop, Joris J., de Castro, Inês J., van Leenen, Dik, Koerkamp, Marian J.A. Groot, Ko, Cheuk W., Miles, Antony J., Brabers, Nathalie, Brok, Mariel O., Lenstra, Tineke L., Fiedler, Dorothea, Fokkens, Like, Aldecoa, Rodrigo, Apweiler, Eva, Taliadouros, Virginia, Sameith, Katrin, van de Pasch, Loes A.L., van Hooff, Sander R., Bakker, Linda V., Krogan, Nevan J., Snel, Berend, Holstege, Frank C.P.
Udgivet 2010

An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity

af Calandrini, Camilla, Schutgens, Frans, Oka, Rurika, Margaritis, Thanasis, Candelli, Tito, Mathijsen, Luka, Ammerlaan, Carola, van Ineveld, Ravian L., Derakhshan, Sepide, de Haan, Sanne, Dolman, Emmy, Lijnzaad, Philip, Custers, Lars, Begthel, Harry, Kerstens, Hindrik H. D., Visser, Lindy L., Rookmaaker, Maarten, Verhaar, Marianne, Tytgat, Godelieve A. M., Kemmeren, Patrick, de Krijger, Ronald R., Al-Saadi, Reem, Pritchard-Jones, Kathy, Kool, Marcel, Rios, Anne C., van den Heuvel-Eibrink, Marry M., Molenaar, Jan J., van Boxtel, Ruben, Holstege, Frank C. P., Clevers, Hans, Drost, Jarno
Udgivet i Nat Commun (2020)

Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell

af Kildisiute, Gerda, Kholosy, Waleed M., Young, Matthew D., Roberts, Kenny, Elmentaite, Rasa, van Hooff, Sander R., Pacyna, Clarissa N., Khabirova, Eleonora, Piapi, Alice, Thevanesan, Christine, Bugallo-Blanco, Eva, Burke, Christina, Mamanova, Lira, Keller, Kaylee M., Langenberg-Ververgaert, Karin P.S., Lijnzaad, Philip, Margaritis, Thanasis, Holstege, Frank C.P., Tas, Michelle L., Wijnen, Marc H.W.A., van Noesel, Max M., del Valle, Ignacio, Barone, Giuseppe, van der Linden, Reinier, Duncan, Catriona, Anderson, John, Achermann, John C., Haniffa, Muzlifah, Teichmann, Sarah A., Rampling, Dyanne, Sebire, Neil J., He, Xiaoling, de Krijger, Ronald R., Barker, Roger A., Meyer, Kerstin B., Bayraktar, Omer, Straathof, Karin, Molenaar, Jan J., Behjati, Sam
Udgivet i Sci Adv (2021)

Single cell derived mRNA signals across human kidney tumors

af Young, Matthew D., Mitchell, Thomas J., Custers, Lars, Margaritis, Thanasis, Morales-Rodriguez, Francisco, Kwakwa, Kwasi, Khabirova, Eleonora, Kildisiute, Gerda, Oliver, Thomas R. W., de Krijger, Ronald R., van den Heuvel-Eibrink, Marry M., Comitani, Federico, Piapi, Alice, Bugallo-Blanco, Eva, Thevanesan, Christine, Burke, Christina, Prigmore, Elena, Ambridge, Kirsty, Roberts, Kenny, Braga, Felipe A. Vieira, Coorens, Tim H. H., Del Valle, Ignacio, Wilbrey-Clark, Anna, Mamanova, Lira, Stewart, Grant D., Gnanapragasam, Vincent J., Rampling, Dyanne, Sebire, Neil, Coleman, Nicholas, Hook, Liz, Warren, Anne, Haniffa, Muzlifah, Kool, Marcel, Pfister, Stefan M., Achermann, John C., He, Xiaoling, Barker, Roger A., Shlien, Adam, Bayraktar, Omer A., Teichmann, Sarah A., Holstege, Frank C., Meyer, Kerstin B., Drost, Jarno, Straathof, Karin, Behjati, Sam
Udgivet i Nat Commun (2021)