Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information

Por Pedamallu, Chandra Sekhar, Posfai, Janos
Publicado em 2010

Faster Protein Splicing with the Nostoc punctiforme DnaE Intein Using Non-native Extein Residues

Por Cheriyan, Manoj, Pedamallu, Chandra Sekhar, Tori, Kazuo, Perler, Francine
Publicado em 2013

Cloning of NruI and Sbo13I restriction and modification sstems in E. coli and amino acid sequence comparison of M.NruI and M.Sbo13I with other amino-methyltransferases

Por Zhu, Zhenyu, Pedamallu, Chandra Sekhar, Fomenkov, Alexey, Benner, Jack, Xu, Shuang-yong
Publicado em 2010

PathSeq: A comprehensive computational tool for the identification or discovery of microorganisms by deep sequencing of human tissue

Por Kostic, Aleksandar D, Ojesina, Akinyemi I, Pedamallu, Chandra Sekhar, Jung, Joonil, Getz, Gad, Meyerson, Matthew
Publicado em 2011

Kmt2a cooperates with menin to suppress tumorigenesis in mouse pancreatic islets

Por Lin, Wenchu, Francis, Joshua M., Li, Hong, Gao, Xiaoping, Pedamallu, Chandra Sekhar, Ernst, Patricia, Meyerson, Matthew
Publicado no Cancer Biol Ther (2016)

In search of a candidate pathogen for giant cell arteritis: sequencing based characterization of the giant cell arteritis microbiome

Por Bhatt, Ami S., Manzo, Veronica E., Pedamallu, Chandra Sekhar, Duke, Fujiko, Cai, Diana, Bienfang, Don C., Padera, Robert F., Meyerson, Matthew, Docken, William P.
Publicado em 2014

Validation and Calibration of Next-Generation Sequencing to Identify Epstein-Barr Virus-Positive Gastric Cancer in The Cancer Genome Atlas

Por Camargo, M. Constanza, Bowlby, Reanne, Chu, Andy, Pedamallu, Chandra Sekhar, Thorsson, Vesteinn, Elmore, Sandra, Mungall, Andrew J., Bass, Adam J., Gulley, Margaret L., Rabkin, Charles S.
Publicado no Gastric Cancer (2015)

The tumor virus landscape of AIDS-related lymphomas

Por Arvey, Aaron, Ojesina, Akinyemi I., Pedamallu, Chandra Sekhar, Ballon, Gianna, Jung, Joonil, Duke, Fujiko, Leoncini, Lorenzo, De Falco, Giulia, Bressman, Eric, Tam, Wayne, Chadburn, Amy, Meyerson, Matthew, Cesarman, Ethel
Publicado no Blood (2015)

A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS)

Por Løvoll, Marie, Wiik-Nielsen, Jannicke, Grove, Søren, Wiik-Nielsen, Christer R, Kristoffersen, Anja B, Faller, Randi, Poppe, Trygve, Jung, Joonil, Pedamallu, Chandra S, Nederbragt, Alexander J, Meyerson, Matthew, Rimstad, Espen, Tengs, Torstein
Publicado em 2010

A Pan-Cancer Analysis of Transcriptome Changes Associated with Somatic Mutations in U2AF1 Reveals Commonly Altered Splicing Events

Por Brooks, Angela N., Choi, Peter S., de Waal, Luc, Sharifnia, Tanaz, Imielinski, Marcin, Saksena, Gordon, Pedamallu, Chandra Sekhar, Sivachenko, Andrey, Rosenberg, Mara, Chmielecki, Juliann, Lawrence, Michael S., DeLuca, David S., Getz, Gad, Meyerson, Matthew
Publicado em 2014

DNA copy number analysis of metastatic urothelial carcinoma with comparison to primary tumors

Por Bambury, Richard M, Bhatt, Ami S, Riester, Markus, Pedamallu, Chandra Sekhar, Duke, Fujiko, Bellmunt, Joaquim, Stack, Edward C, Werner, Lillian, Park, Rachel, Iyer, Gopa, Loda, Massimo, Kantoff, Philip W, Michor, Franziska, Meyerson, Matthew, Rosenberg, Jonathan E
Publicado no BMC Cancer (2015)

Genetic modifiers of EGFR dependence in non-small cell lung cancer

Por Sharifnia, Tanaz, Rusu, Victor, Piccioni, Federica, Bagul, Mukta, Imielinski, Marcin, Cherniack, Andrew D., Pedamallu, Chandra Sekhar, Wong, Bang, Wilson, Frederick H., Garraway, Levi A., Altshuler, David, Golub, Todd R., Root, David E., Subramanian, Aravind, Meyerson, Matthew
Publicado no Proc Natl Acad Sci U S A (2014)

EGFR variant heterogeneity in glioblastoma resolved through single-nucleus sequencing

Por Francis, Joshua M., Zhang, Cheng-Zhong, Maire, Cecile L., Jung, Joonil, Manzo, Veronica E., Adalsteinsson, Viktor A., Homer, Heather, Haidar, Sam, Blumenstiel, Brendan, Pedamallu, Chandra Sekhar, Ligon, Azra H., Love, J. Christopher, Meyerson, Matthew, Ligon, Keith L.
Publicado em 2014

Complete hematologic response of early T-cell progenitor acute lymphoblastic leukemia to the γ-secretase inhibitor BMS-906024: genetic and epigenetic findings in an outlier case

Por Knoechel, Birgit, Bhatt, Ami, Pan, Li, Pedamallu, Chandra S., Severson, Eric, Gutierrez, Alejandro, Dorfman, David M., Kuo, Frank C., Kluk, Michael, Kung, Andrew L., Zweidler-McKay, Patrick, Meyerson, Matthew, Blacklow, Stephen C., DeAngelo, Daniel J., Aster, Jon C.
Publicado no Cold Spring Harb Mol Case Stud (2015)

Inhibitor-sensitive FGFR2 and FGFR3 mutations in lung squamous cell carcinoma

Por Liao, Rachel G., Jung, Joonil, Tchaicha, Jeremy, Wilkerson, Matthew D., Sivachenko, Andrey, Beauchamp, Ellen M., Liu, Qingsong, Pugh, Trevor J., Pedamallu, Chandra Sekhar, Hayes, D. Neil, Gray, Nathanael S., Getz, Gad, Wong, Kwok-Kin, Haddad, Robert I., Meyerson, Matthew, Hammerman, Peter S.
Publicado em 2013

Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn’s Disease

Por Pedamallu, Chandra Sekhar, Bhatt, Ami S., Bullman, Susan, Fowler, Sharyle, Freeman, Samuel S., Durand, Jacqueline, Jung, Joonil, Duke, Fujiko, Manzo, Veronica, Cai, Diana, Ananthakrishnan, Ashwin, Ojesina, Akinyemi I., Ramachandran, Aruna, Gevers, Dirk, Xavier, Ramnik J., Bhan, Atul K., Meyerson, Matthew, Yajnik, Vijay
Publicado no Cell Mol Gastroenterol Hepatol (2016)

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

Por Kostic, Aleksandar D., Gevers, Dirk, Pedamallu, Chandra Sekhar, Michaud, Monia, Duke, Fujiko, Earl, Ashlee M., Ojesina, Akinyemi I., Jung, Joonil, Bass, Adam J., Tabernero, Josep, Baselga, José, Liu, Chen, Shivdasani, Ramesh A., Ogino, Shuji, Birren, Bruce W., Huttenhower, Curtis, Garrett, Wendy S., Meyerson, Matthew
Publicado em 2012

SOX2 and p63 colocalize at genetic loci in squamous cell carcinomas

Por Watanabe, Hideo, Ma, Qiuping, Peng, Shouyong, Adelmant, Guillaume, Swain, Danielle, Song, Wenyu, Fox, Cameron, Francis, Joshua M., Pedamallu, Chandra Sekhar, DeLuca, David S., Brooks, Angela N., Wang, Su, Que, Jianwen, Rustgi, Anil K., Wong, Kwok-kin, Ligon, Keith L., Liu, X. Shirley, Marto, Jarrod A., Meyerson, Matthew, Bass, Adam J.
Publicado em 2014

Integrative and comparative genomic analysis of HPV-positive and HPV-negative head and neck squamous cell carcinomas

Por Seiwert, Tanguy Y, Zuo, Zhixiang, Keck, Michaela K, Khattri, Arun, Pedamallu, Chandra S., Stricker, Thomas, Brown, Christopher, Pugh, Trevor J., Stojanov, Petar, Cho, Juok, Lawrence, Michael S., Getz, Gad, Brägelmann, Johannes, DeBoer, Rebecca, Weichselbaum, Ralph R, Langerman, Alexander, Portugal, Louis, Blair, Elizabeth, Stenson, Kerstin, Lingen, Mark W., Cohen, Ezra EW, Vokes, Everett E., White, Kevin P., Hammerman, Peter S.
Publicado no Clin Cancer Res (2014)

Sequence-Based Discovery of Bradyrhizobium enterica in Cord Colitis Syndrome

Por Bhatt, Ami S., Freeman, Samuel S., Herrera, Alex F., Pedamallu, Chandra Sekhar, Gevers, Dirk, Duke, Fujiko, Jung, Joonil, Michaud, Monia, Walker, Bruce J., Young, Sarah, Earl, Ashlee M., Kostic, Aleksander D., Ojesina, Akinyemi I., Hasserjian, Robert, Ballen, Karen K., Chen, Yi-Bin, Hobbs, Gabriela, Antin, Joseph H., Soiffer, Robert J., Baden, Lindsey R., Garrett, Wendy S., Hornick, Jason L., Marty, Francisco M., Meyerson, Matthew
Publicado em 2013