Genomic Investigation into Strain Heterogeneity and Pathogenic Potential of the Emerging Gastrointestinal Pathogen Campylobacter ureolyticus

по Bullman, Susan, Lucid, Alan, Corcoran, Daniel, Sleator, Roy D., Lucey, Brigid
Опубликовано 2013

Molecular-based detection of the gastrointestinal pathogen Campylobacter ureolyticus in unpasteurized milk samples from two cattle farms in Ireland

по Koziel, Monika, Lucey, Brigid, Bullman, Susan, Corcoran, Gerard D, Sleator, Roy D
Опубликовано 2012

Epsilonproteobacteria in Humans, New Zealand

по Bullman, Susan, Corcoran, Daniel, O’Leary, James, Byrne, Deirdre, Lucey, Brigid, Sleator, Roy D.
Опубликовано 2012

Draft Genome Sequence of Campylobacter corcagiensis Strain CIT045(T), a Representative of a Novel Campylobacter Species Isolated from Lion-Tailed Macaques (Macaca silenus)

по Koziel, Monika, Lucid, Alan, Bullman, Susan, Corcoran, Gerard D., Lucey, Brigid, Sleator, Roy D.
Опубликовано 2014

Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate

по Lucid, Alan, Bullman, Susan, Koziel, Monika, Corcoran, Gerard D., Cotter, Paul D., Sleator, Roy D., Lucey, Brigid
Опубликовано 2014

GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts

по Walker, Mark A, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I, Bullman, Susan, Sharpe, Ted, Whelan, Christopher W, Meyerson, Matthew
Опубликовано в: Bioinformatics (2018)

Comprehensive metagenomic analysis of blastic plasmacytoid dendritic cell neoplasm

по Nomburg, Jason, Bullman, Susan, Chung, Sun Sook, Togami, Katsuhiro, Walker, Mark A., Griffin, Gabriel K., Morgan, Elizabeth A., LeBoeuf, Nicole R., DeCaprio, James A., Meyerson, Matthew, Lane, Andrew A.
Опубликовано в: Blood Adv (2020)

Commensal Microbiota Promote Lung Cancer Development via γδ T Cells

по Jin, Chengcheng, Lagoudas, Georgia, Zhao, Chen, Bullman, Susan, Bhutkar, Arjun, Hu, Bo, Ameh, Samuel, Sandel, Demi, Liang, Xu Sue, Mazzilli, Sarah, Whary, Mark T., Meyerson, Matthew, Germain, Ronald, Blainey, Paul C., Fox, James G., Jacks, Tyler
Опубликовано в: Cell (2019)

Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn’s Disease

по Pedamallu, Chandra Sekhar, Bhatt, Ami S., Bullman, Susan, Fowler, Sharyle, Freeman, Samuel S., Durand, Jacqueline, Jung, Joonil, Duke, Fujiko, Manzo, Veronica, Cai, Diana, Ananthakrishnan, Ashwin, Ojesina, Akinyemi I., Ramachandran, Aruna, Gevers, Dirk, Xavier, Ramnik J., Bhan, Atul K., Meyerson, Matthew, Yajnik, Vijay
Опубликовано в: Cell Mol Gastroenterol Hepatol (2016)

Dietary Patterns and Risk of Colorectal Cancer Subtypes Classified by Fusobacterium nucleatum in Tumor Tissue

по Mehta, Raaj S., Nishihara, Reiko, Cao, Yin, Song, Mingyang, Mima, Kosuke, Qian, Zhi Rong, Nowak, Jonathan A., Kosumi, Keisuke, Hamada, Tsuyoshi, Masugi, Yohei, Bullman, Susan, Drew, David A., Kostic, Aleksandar D., Fung, Teresa T., Garrett, Wendy S., Huttenhower, Curtis, Wu, Kana, Meyerhardt, Jeffrey A., Zhang, Xuehong, Willett, Walter C., Giovannucci, Edward L., Fuchs, Charles S., Chan, Andrew T., Ogino, Shuji
Опубликовано в: JAMA Oncol (2017)

Fusobacterium nucleatum and T-cells in Colorectal Carcinoma

по Mima, Kosuke, Sukawa, Yasutaka, Nishihara, Reiko, Qian, Zhi Rong, Yamauchi, Mai, Inamura, Kentaro, Kim, Sun A, Masuda, Atsuhiro, Nowak, Jonathan A., Nosho, Katsuhiko, Kostic, Alecsandar D., Giannakis, Marios, Watanabe, Hideo, Bullman, Susan, Milner, Danny A., Harris, Curtis C., Giovannucci, Edward, Garraway, Levi A., Freeman, Gordon J., Dranoff, Glenn, Chan, Andrew T., Garrett, Wendy S., Huttenhower, Curtis, Fuchs, Charles S., Ogino, Shuji
Опубликовано в: JAMA Oncol (2015)

Fusobacterium nucleatum in colorectal carcinoma tissue and patient prognosis

по Mima, Kosuke, Nishihara, Reiko, Qian, Zhi Rong, Cao, Yin, Sukawa, Yasutaka, Nowak, Jonathan A., Yang, Juhong, Dou, Ruoxu, Masugi, Yohei, Song, Mingyang, Kostic, Aleksandar D., Giannakis, Marios, Bullman, Susan, Milner, Danny A., Baba, Hideo, Giovannucci, Edward L., Garraway, Levi A., Freeman, Gordon J., Dranoff, Glenn, Garrett, Wendy S., Huttenhower, Curtis, Meyerson, Matthew, Meyerhardt, Jeffrey A., Chan, Andrew T., Fuchs, Charles S., Ogino, Shuji
Опубликовано в: Gut (2015)

Analysis of Fusobacterium persistence and antibiotic response in colorectal cancer

по Bullman, Susan, Pedamallu, Chandra S., Sicinska, Ewa, Clancy, Thomas E., Zhang, Xiaoyang, Cai, Diana, Neuberg, Donna, Huang, Katherine, Guevara, Fatima, Nelson, Timothy, Chipashvili, Otari, Hagan, Timothy, Walker, Mark, Ramachandran, Aruna, Diosdado, Begoña, Serna, Garazi, Mulet, Nuria, Landolfi, Stefania, Cajal, Santiago Ramon y, Fasani, Roberta, Aguirre, Andrew J., Ng, Kimmie, Élez, Elena, Ogino, Shuji, Tabernero, Josep, Fuchs, Charles S., Hahn, William C., Nuciforo, Paolo, Meyerson, Matthew
Опубликовано в: Science (2017)

Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas

по Liu, Yang, Sethi, Nilay S., Hinoue, Toshinori, Schneider, Barbara G., Cherniack, Andrew D., Sanchez-Vega, Francisco, Seoane, Jose A., Farshidfar, Farshad, Bowlby, Reanne, Islam, Mirazul, Kim, Jaegil, Chatila, Walid, Akbani, Rehan, Kanchi, Rupa S., Rabkin, Charles S., Willis, Joseph E., Wang, Kenneth K., McCall, Shannon J., Mishra, Lopa, Ojesina, Akinyemi I., Bullman, Susan, Pedamallu, Chandra Sekhar, Lazar, Alexander J., Sakai, Ryo, Thorsson, Vésteinn, Bass, Adam J., Laird, Peter W.
Опубликовано в: Cancer Cell (2018)

Fusobacterium nucleatum in Colorectal Carcinoma Tissue According to Tumor Location

по Mima, Kosuke, Cao, Yin, Chan, Andrew T, Qian, Zhi Rong, Nowak, Jonathan A, Masugi, Yohei, Shi, Yan, Song, Mingyang, da Silva, Annacarolina, Gu, Mancang, Li, Wanwan, Hamada, Tsuyoshi, Kosumi, Keisuke, Hanyuda, Akiko, Liu, Li, Kostic, Aleksandar D, Giannakis, Marios, Bullman, Susan, Brennan, Caitlin A, Milner, Danny A, Baba, Hideo, Garraway, Levi A, Meyerhardt, Jeffrey A, Garrett, Wendy S, Huttenhower, Curtis, Meyerson, Matthew, Giovannucci, Edward L, Fuchs, Charles S, Nishihara, Reiko, Ogino, Shuji
Опубликовано в: Clin Transl Gastroenterol (2016)

Fusobacterium nucleatum in Colorectal Cancer Relates to Immune Response Differentially by Tumor Microsatellite Instability Status

по Hamada, Tsuyoshi, Zhang, Xuehong, Mima, Kosuke, Bullman, Susan, Sukawa, Yasutaka, Nowak, Jonathan A., Kosumi, Keisuke, Masugi, Yohei, Twombly, Tyler S., Cao, Yin, Song, Mingyang, Liu, Li, da Silva, Annacarolina, Shi, Yan, Gu, Mancang, Li, Wanwan, Koh, Hideo, Nosho, Katsuhiko, Inamura, Kentaro, Keum, NaNa, Wu, Kana, Meyerhardt, Jeffrey A., Kostic, Aleksandar D., Huttenhower, Curtis, Garrett, Wendy S., Meyerson, Matthew, Giovannucci, Edward L., Chan, Andrew T., Fuchs, Charles S., Nishihara, Reiko, Giannakis, Marios, Ogino, Shuji
Опубликовано в: Cancer Immunol Res (2018)

Association of autophagy status with amount of Fusobacterium nucleatum in colorectal cancer

по Haruki, Koichiro, Kosumi, Keisuke, Hamada, Tsuyoshi, Twombly, Tyler S., Väyrynen, Juha P., Kim, Sun A., Masugi, Yohei, Qian, Zhi Rong, Mima, Kosuke, Baba, Yoshifumi, da Silva, Annacarolina, Borowsky, Jennifer, Arima, Kota, Fujiyoshi, Kenji, Lau, Mai Chan, Li, Peilong, Guo, Chunguang, Chen, Yang, Song, Mingyang, Nowak, Jonathan A., Nishihara, Reiko, Yanaga, Katsuhiko, Zhang, Xuehong, Wu, Kana, Bullman, Susan, Garrett, Wendy S., Huttenhower, Curtis, Meyerhardt, Jeffrey A., Giannakis, Marios, Chan, Andrew T., Fuchs, Charles S., Ogino, Shuji
Опубликовано в: J Pathol (2020)

The Amount of Bifidobacterium Genus in Colorectal Carcinoma Tissue in Relation to Tumor Characteristics and Clinical Outcome

по Kosumi, Keisuke, Hamada, Tsuyoshi, Koh, Hideo, Borowsky, Jennifer, Bullman, Susan, Twombly, Tyler S., Nevo, Daniel, Masugi, Yohei, Liu, Li, da Silva, Annacarolina, Chen, Yang, Du, Chunxia, Gu, Mancang, Li, Chenxi, Li, Wanwan, Liu, Hongli, Shi, Yan, Mima, Kosuke, Song, Mingyang, Nosho, Katsuhiko, Nowak, Jonathan A., Nishihara, Reiko, Baba, Hideo, Zhang, Xuehong, Wu, Kana, Wang, Molin, Huttenhower, Curtis, Garrett, Wendy S., Meyerson, Matthew L., Lennerz, Jochen K., Giannakis, Marios, Chan, Andrew T., Meyerhardt, Jeffrey A., Fuchs, Charles S., Ogino, Shuji
Опубликовано в: Am J Pathol (2018)

Diets That Promote Colon Inflammation Associate With Risk of Colorectal Carcinomas That Contain Fusobacterium nucleatum

по Liu, Li, Tabung, Fred K., Zhang, Xuehong, Nowak, Jonathan A., Qian, Zhi Rong, Hamada, Tsuyoshi, Nevo, Daniel, Bullman, Susan, Mima, Kosuke, Kosumi, Keisuke, da Silva, Annacarolina, Song, Mingyang, Cao, Yin, Twombly, Tyler S., Shi, Yan, Liu, Hongli, Gu, Mancang, Koh, Hideo, Li, Wanwan, Du, Chunxia, Chen, Yang, Li, Chenxi, Li, Wenbin, Mehta, Raaj S., Wu, Kana, Wang, Molin, Kostic, Aleksander D., Giannakis, Marios, Garrett, Wendy S., Hutthenhower, Curtis, Chan, Andrew T., Fuchs, Charles S., Nishihara, Reiko, Ogino, Shuji, Giovannucci, Edward L.
Опубликовано в: Clin Gastroenterol Hepatol (2018)

Association of Fusobacterium nucleatum with Specific T Cell Subsets in the Colorectal Carcinoma Microenvironment

по Borowsky, Jennifer, Haruki, Koichiro, Lau, Mai Chan, Costa, Andressa Dias, Väyrynen, Juha P., Ugai, Tomotaka, Arima, Kota, da Silva, Annacarolina, Felt, Kristen D., Zhao, Melissa, Gurjao, Carino, Twombly, Tyler S., Fujiyoshi, Kenji, Väyrynen, Sara A., Hamada, Tsuyoshi, Mima, Kosuke, Bullman, Susan, Harrison, Tabitha A., Phipps, Amanda I., Peters, Ulrike, Ng, Kimmie, Meyerhardt, Jeffrey A., Song, Mingyang, Giovannucci, Edward L., Wu, Kana, Zhang, Xuehong, Freeman, Gordon J., Huttenhower, Curtis, Garrett, Wendy S., Chan, Andrew T., Leggett, Barbara A., Whitehall, Vicki L. J., Walker, Neal, Brown, Ian, Bettington, Mark, Nishihara, Reiko, Fuchs, Charles S., Lennerz, Jochen K., Giannakis, Marios, Nowak, Jonathan A., Ogino, Shuji
Опубликовано в: Clin Cancer Res (2021)