GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts

SUMMARY: We present an updated version of our computational pipeline, PathSeq, for the discovery and identification of microbial sequences in genomic and transcriptomic libraries from eukaryotic hosts. This pipeline is available in the Genome Analysis Toolkit (GATK) as a suite of configurable tools...

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Shranjeno v:
Bibliografske podrobnosti
izdano v:Bioinformatics
Main Authors: Walker, Mark A, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I, Bullman, Susan, Sharpe, Ted, Whelan, Christopher W, Meyerson, Matthew
Format: Artigo
Jezik:Inglês
Izdano: Oxford University Press 2018
Teme:
Applications Notes
Online dostop:https://ncbi.nlm.nih.gov/pmc/articles/PMC6289130/
https://ncbi.nlm.nih.gov/pubmed/29982281
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/bty501
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