GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts

SUMMARY: We present an updated version of our computational pipeline, PathSeq, for the discovery and identification of microbial sequences in genomic and transcriptomic libraries from eukaryotic hosts. This pipeline is available in the Genome Analysis Toolkit (GATK) as a suite of configurable tools...

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Publicado no:Bioinformatics
Main Authors: Walker, Mark A, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I, Bullman, Susan, Sharpe, Ted, Whelan, Christopher W, Meyerson, Matthew
Formato: Artigo
Idioma:Inglês
Publicado em: Oxford University Press 2018
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Applications Notes
Acesso em linha:https://ncbi.nlm.nih.gov/pmc/articles/PMC6289130/
https://ncbi.nlm.nih.gov/pubmed/29982281
https://ncbi.nlm.nih.govhttp://dx.doi.org/10.1093/bioinformatics/bty501
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