How Next-Generation Sequencing and Multiscale Data Analysis Will Transform Infectious Disease Management

Bằng Pak, Theodore R., Kasarskis, Andrew
Xuất bản năm Clin Infect Dis (2015)

ChromoZoom: a flexible, fluid, web-based genome browser

Bằng Pak, Theodore R., Roth, Frederick P.
Được phát hành 2013

Sequence-based estimation of minisatellite and microsatellite repeat variability

Bằng Legendre, Matthieu, Pochet, Nathalie, Pak, Theodore, Verstrepen, Kevin J.
Được phát hành 2007

Estimating local costs associated with Clostridium difficile infection using machine learning and electronic medical records

Bằng Pak, Theodore R., Chacko, Kieran, O’Donnell, Timothy, Huprikar, Shirish, van Bakel, Harm, Kasarskis, Andrew, Scott, Erick R.
Xuất bản năm Infect Control Hosp Epidemiol (2017)

Genetic Basis of Emerging Vancomycin, Linezolid, and Daptomycin Heteroresistance in a Case of Persistent Enterococcus faecium Bacteremia

Bằng Chacko, Kieran I., Sullivan, Mitchell J., Beckford, Colleen, Altman, Deena R., Ciferri, Brianne, Pak, Theodore R., Sebra, Robert, Kasarskis, Andrew, Hamula, Camille L., van Bakel, Harm
Xuất bản năm Antimicrob Agents Chemother (2018)

High-dimensional CyTOF analysis of dengue virus–infected human DCs reveals distinct viral signatures

Bằng Hamlin, Rebecca E., Rahman, Adeeb, Pak, Theodore R., Maringer, Kevin, Mena, Ignacio, Bernal-Rubio, Dabeiba, Potla, Uma, Maestre, Ana M., Fredericks, Anthony C., Amir, El-ad D., Kasarskis, Andrew, Ramos, Irene, Merad, Miriam, Fernandez-Sesma, Ana
Xuất bản năm JCI Insight (2017)

Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient

Bằng Bashir, Ali, Attie, Oliver, Sullivan, Mitchell, Sebra, Robert, Singh, Kavindra V., Altman, Deena, Pak, Theodore, Dutta, Jayeeta, Chacko, Kieran, Webster, Elizabeth, Lewis, Martha, Hamula, Camille, Delli Carpini, Kristin W., Murray, Barbara E., Kasarskis, Andrew, van Bakel, Harm, Huprikar, Shirish
Xuất bản năm PLoS One (2017)

Whole-Genome Sequencing Identifies Emergence of a Quinolone Resistance Mutation in a Case of Stenotrophomonas maltophilia Bacteremia

Bằng Pak, Theodore R., Altman, Deena R., Attie, Oliver, Sebra, Robert, Hamula, Camille L., Lewis, Martha, Deikus, Gintaras, Newman, Leah C., Fang, Gang, Hand, Jonathan, Patel, Gopi, Wallach, Fran, Schadt, Eric E., Huprikar, Shirish, van Bakel, Harm, Kasarskis, Andrew, Bashir, Ali
Xuất bản năm Antimicrob Agents Chemother (2015)

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases

Bằng Michlmayr, Daniela, Pak, Theodore R, Rahman, Adeeb H, Amir, El‐Ad David, Kim, Eun‐Young, Kim‐Schulze, Seunghee, Suprun, Maria, Stewart, Michael G, Thomas, Guajira P, Balmaseda, Angel, Wang, Li, Zhu, Jun, Suaréz‐Fariñas, Mayte, Wolinsky, Steven M, Kasarskis, Andrew, Harris, Eva
Xuất bản năm Mol Syst Biol (2018)

PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks

Bằng Berbel Caban, Ana, Pak, Theodore R., Obla, Ajay, Dupper, Amy C., Chacko, Kieran I., Fox, Lindsey, Mills, Alexandra, Ciferri, Brianne, Oussenko, Irina, Beckford, Colleen, Chung, Marilyn, Sebra, Robert, Smith, Melissa, Conolly, Sarah, Patel, Gopi, Kasarskis, Andrew, Sullivan, Mitchell J., Altman, Deena R., van Bakel, Harm
Xuất bản năm Genome Med (2020)

Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection

Bằng Altman, Deena R., Sullivan, Mitchell J., Chacko, Kieran I., Balasubramanian, Divya, Pak, Theodore R., Sause, William E., Kumar, Krishan, Sebra, Robert, Deikus, Gintaras, Attie, Oliver, Rose, Hannah, Lewis, Martha, Fulmer, Yi, Bashir, Ali, Kasarskis, Andrew, Schadt, Eric E., Richardson, Anthony R., Torres, Victor J., Shopsin, Bo, van Bakel, Harm
Xuất bản năm Infect Immun (2018)

A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbrea...

Bằng Sullivan, Mitchell J., Altman, Deena R., Chacko, Kieran I., Ciferri, Brianne, Webster, Elizabeth, Pak, Theodore R., Deikus, Gintaras, Lewis-Sandari, Martha, Khan, Zenab, Beckford, Colleen, Rendo, Angela, Samaroo, Flora, Sebra, Robert, Karam-Howlin, Ramona, Dingle, Tanis, Hamula, Camille, Bashir, Ali, Schadt, Eric, Patel, Gopi, Wallach, Frances, Kasarskis, Andrew, Gibbs, Kathleen, van Bakel, Harm
Xuất bản năm J Clin Microbiol (2019)

Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis

Bằng Oliveira, Pedro H., Ribis, John W., Garrett, Elizabeth M., Trzilova, Dominika, Kim, Alex, Sekulovic, Ognjen, Mead, Edward A., Pak, Theodore, Zhu, Shijia, Deikus, Gintaras, Touchon, Marie, Lewis-Sandari, Martha, Beckford, Colleen, Zeitouni, Nathalie E., Altman, Deena R., Webster, Elizabeth, Oussenko, Irina, Bunyavanich, Supinda, Aggarwal, Aneel K., Bashir, Ali, Patel, Gopi, Wallach, Frances, Hamula, Camille, Huprikar, Shirish, Schadt, Eric E., Sebra, Robert, van Bakel, Harm, Kasarskis, Andrew, Tamayo, Rita, Shen, Aimee, Fang, Gang
Xuất bản năm Nat Microbiol (2019)

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

Bằng Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Được phát hành 2012