Permanganate/S1 nuclease footprinting reveals non-B DNA structures with regulatory potential across a mammalian genome

Por Kouzine, Fedor, Wojtowicz, Damian, Baranello, Laura, Yamane, Arito, Nelson, Steevenson, Resch, Wolfgang, Kieffer-Kwon, Kyong-Rim, Benham, Craig, Casellas, Rafael, Przytycka, Teresa M., Levens, David
Publicado no Cell Syst (2017)

53BP1 alters the landscape of DNA rearrangements and suppresses AID-induced B cell lymphoma

Por Jankovic, Mila, Feldhahn, Niklas, Oliveira, Thiago Y., Silva, Israel T., Kieffer-Kwon, Kyong-rim, Yamane, Arito, Resch, Wolfgang, Klein, Isaac, Robbiani, Davide F., Casellas, Rafael, Nussenzweig, Michel C.
Publicado em 2013

The cell cycle restricts activation-induced cytidine deaminase activity to early G1

Por Wang, Qiao, Kieffer-Kwon, Kyong-Rim, Oliveira, Thiago Y., Mayer, Christian T., Yao, Kaihui, Pai, Joy, Cao, Zhen, Dose, Marei, Casellas, Rafael, Jankovic, Mila, Nussenzweig, Michel C., Robbiani, Davide F.
Publicado no J Exp Med (2017)

RAG Represents a Widespread Threat to the Lymphocyte Genome

Por Teng, Grace, Maman, Yaakov, Resch, Wolfgang, Kim, Min, Yamane, Arito, Qian, Jason, Kieffer-Kwon, Kyong-Rim, Mandal, Malay, Ji, Yanhong, Meffre, Eric, Clark, Marcus R., Cowell, Lindsay G., Casellas, Rafael, Schatz, David G.
Publicado no Cell (2015)

Global regulation of promoter melting in naïve lymphocytes

Por Kouzine, Fedor, Wojtowicz, Damian, Yamane, Arito, Resch, Wolfgang, Kieffer-Kwon, Kyong-Rim, Bandle, Russell, Nelson, Steevenson, Nakahashi, Hirotaka, Awasthi, Parirokh, Feigenbaum, Lionel, Menoni, Herve, Hoeijmakers, Jan, Vermeulen, Wim, Ge, Hui, Przytycka, Teresa M., Levens, David, Casellas, Rafael
Publicado em 2013

Convergent Transcription At Intragenic Super-Enhancers Targets AID-initiated Genomic Instability

Por Meng, Fei-Long, Du, Zhou, Federation, Alexander, Hu, Jiazhi, Wang, Qiao, Kieffer-Kwon, Kyong-Rim, Meyers, Robin M., Amor, Corina, Wasserman, Caitlyn R., Neuberg, Donna, Casellas, Rafael, Nussenzweig, Michel C., Bradner, James E., Liu, X. Shirley, Alt, Frederick W.
Publicado no Cell (2014)

A Genome-wide Map of CTCF Multivalency Redefines the CTCF Code

Por Nakahashi, Hirotaka, Kieffer Kwon, Kyong-Rim, Resch, Wolfgang, Vian, Laura, Dose, Marei, Stavreva, Diana, Hakim, Ofir, Pruett, Nathanael, Nelson, Steevenson, Yamane, Arito, Qian, Jason, Dubois, Wendy, Welsh, Scott, Phair, Robert D., Pugh, B. Franklin, Lobanenkov, Victor, Hager, Gordon L., Casellas, Rafael
Publicado em 2013

Genome Organization Drives Chromosome Fragility

Por Canela, Andres, Maman, Yaakov, Jung, Seolkyoung, Wong, Nancy, Callen, Elsa, Day, Amanda, Kieffer-Kwon, Kyong-Rim, Pekowska, Aleksandra, Zhang, Hongliang, Rao, Suhas S.P., Huang, Su-Chen, Mckinnon, Peter J., Aplan, Peter D., Pommier, Yves, Aiden, Erez Lieberman, Casellas, Rafael, Nussenzweig, André
Publicado no Cell (2017)

DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes

Por Hakim, Ofir, Resch, Wolfgang, Yamane, Arito, Klein, Isaac, Kieffer-Kwon, Kyong-Rim, Jankovic, Mila, Oliveira, Thiago, Bothmer, Anne, Voss, Ty C., Ansarah-Sobrinho, Camilo, Mathe, Ewy, Liang, Genqing, Cobell, Jesse, Nakahashi, Hirotaka, Robbiani, Davide F., Nussenzweig, Andre, Hager, Gordon L., Nussenzweig, Michel C., Casellas, Rafael
Publicado em 2012

The Chromatin Reader ZMYND8 Regulates Igh Enhancers to Promote Immunoglobulin Class Switch Recombination

Por Delgado-Benito, Verónica, Rosen, Daniel B., Wang, Qiao, Gazumyan, Anna, Pai, Joy A., Oliveira, Thiago Y., Sundaravinayagam, Devakumar, Zhang, Wenzhu, Andreani, Matteo, Keller, Lisa, Kieffer-Kwon, Kyong-Rim, Pękowska, Aleksandra, Jung, Seolkyoung, Driesner, Madlen, Subbotin, Roman I., Casellas, Rafael, Chait, Brian T., Nussenzweig, Michel C., Di Virgilio, Michela
Publicado no Mol Cell (2018)

The folliculin-FNIP1 pathway deleted in human Birt-Hogg-Dubé syndrome is required for murine B-cell development

Por Baba, Masaya, Keller, Jonathan R., Sun, Hong-Wei, Resch, Wolfgang, Kuchen, Stefan, Suh, Hyung Chan, Hasumi, Hisashi, Hasumi, Yukiko, Kieffer-Kwon, Kyong-Rim, Gonzalez, Carme Gallego, Hughes, Robert M., Klein, Mara E., Oh, Hyoungbin F., Bible, Paul, Southon, Eileen, Tessarollo, Lino, Schmidt, Laura S., Linehan, W. Marston, Casellas, Rafael
Publicado em 2012

3D ATAC-PALM: Super-resolution Imaging of the Accessible Genome

Por Xie, Liangqi, Dong, Peng, Chen, Xingqi, Hsieh, Tsung-Han S., Banala, Sambashiva, De Marzio, Margherita, English, Brian P., Qi, Yifeng, Jung, Seol Kyoung, Kieffer-Kwon, Kyong-Rim, Legant, Wesley R., Hansen, Anders S., Schulmann, Anton, Casellas, Rafael, Zhang, Bin, Betzig, Eric, Lavis, Luke D., Chang, Howard Y., Tjian, Robert, Liu, Zhe
Publicado no Nat Methods (2020)

Cohesin loss eliminates all loop domains

Por Rao, Suhas S. P., Huang, Su-Chen, St Hilaire, Brian Glenn, Engreitz, Jesse M., Perez, Elizabeth M., Kieffer-Kwon, Kyong-Rim, Sanborn, Adrian L., Johnstone, Sarah E., Bascom, Gavin D., Bochkov, Ivan D., Huang, Xingfan, Shamim, Muhammad S., Shin, Jaeweon, Turner, Douglass, Ye, Ziyi, Omer, Arina D., Robinson, James T., Schlick, Tamar, Bernstein, Bradley E., Casellas, Rafael, Lander, Eric S., Aiden, Erez Lieberman
Publicado no Cell (2017)

B Cell Super-Enhancers and Regulatory Clusters Recruit AID Tumorigenic Activity

Por Qian, Jason, Wang, Qiao, Dose, Marei, Pruett, Nathanael, Kieffer-Kwon, Kyong-Rim, Resch, Wolfgang, Liang, Genqing, Tang, Zhonghui, Mathé, Ewy, Benner, Christopher, Dubois, Wendy, Nelson, Steevenson, Vian, Laura, Oliveira, Thiago Y., Jankovic, Mila, Hakim, Ofir, Gazumyan, Anna, Pavri, Rushad, Awasthi, Parirokh, Song, Bin, Liu, Geng, Chen, Longyun, Zhu, Shida, Feigenbaum, Lionel, Staudt, Louis, Murre, Cornelis, Ruan, Yijun, Robbiani, Davide F., Pan-Hammarström, Qiang, Nussenzweig, Michel C., Casellas, Rafael
Publicado no Cell (2014)

The energetics and physiological impact of cohesin extrusion

Por Vian, Laura, Pękowska, Aleksandra P, Rao, Suhas S.P., Kieffer-Kwon, Kyong-Rim, Jung, Seolkyoung, Baranello, Laura, Huang, Su-Chen, El Khattabi, Laila, Dose, Marei, Pruett, Nathanael, Sanborn, Adrian L., Canela, Andres, Maman, Yaakov, Oksanen, Anna, Resch, Wolfgang, Li, Xingwang, Lee, Byoungkoo, Kovalchuk, Alexander L., Tang, Zhonghui, Nelson, Steevenson, Pierro, Michele Di, Cheng, Ryan R., Machol, Ido, St Hilaire, Brian Glenn, Durand, Neva C., Shamim, Muhammad S., Stamenova, Elena K., Onuchic, José N., Ruan, Yijun, Nussenzweig, Andre, Levens, David, Aiden, Erez Lieberman, Casellas, Rafael
Publicado no Cell (2018)

The Energetics and Physiological Impact of Cohesin Extrusion

Por Vian, Laura, Pękowska, Aleksandra, Rao, Suhas S.P., Kieffer-Kwon, Kyong-Rim, Jung, Seolkyoung, Baranello, Laura, Huang, Su-Chen, El Khattabi, Laila, Dose, Marei, Pruett, Nathanael, Sanborn, Adrian L., Canela, Andres, Maman, Yaakov, Oksanen, Anna, Resch, Wolfgang, Li, Xingwang, Lee, Byoungkoo, Kovalchuk, Alexander L., Tang, Zhonghui, Nelson, Steevenson, Di Pierro, Michele, Cheng, Ryan R., Machol, Ido, St Hilaire, Brian Glenn, Durand, Neva C., Shamim, Muhammad S., Stamenova, Elena K., Onuchic, José N., Ruan, Yijun, Nussenzweig, Andre, Levens, David, Aiden, Erez Lieberman, Casellas, Rafael
Publicado no Cell (2018)

Myc regulates chromatin decompaction and nuclear architecture during B cell activation

Por Kieffer-Kwon, Kyong-Rim, Nimura, Keisuke, Rao, Suhas S. P., Xu, Jianliang, Jung, Seolkyoung, Pekowska, Aleksandra, Dose, Marei, Stevens, Evan, Mathe, Ewy, Dong, Peng, Huang, Su-Chen, Ricci, Maria Aurelia, Baranello, Laura, Zheng, Ying, Ardori, Francesco Tomassoni, Resch, Wolfgang, Stavreva, Diana, Nelson, Steevenson, McAndrew, Michael, Casellas, Adriel, Finn, Elizabeth, Gregory, Charles, Hilaire, Brian Glenn St., Johnson, Steven M., Dubois, Wendy, Cosma, Maria Pia, Batchelor, Eric, Levens, David, Phair, Robert D., Misteli, Tom, Tessarollo, Lino, Hager, Gordon, Lakadamyali, Melike, Liu, Zhe, Floer, Monique, Shroff, Hari, Aiden, Erez Lieberman, Casellas, Rafael
Publicado no Mol Cell (2017)