The expanding scope of DNA sequencing

af Shendure, Jay, Aiden, Erez Lieberman
Udgivet 2012

Somatic Rearrangement in B cells: It’s (mostly) Nuclear Physics

af Aiden, Erez Lieberman, Casellas, Rafael
Udgivet i Cell (2015)

Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map

af Eagen, Kyle P., Aiden, Erez Lieberman, Kornberg, Roger D.
Udgivet i Proc Natl Acad Sci U S A (2017)

Nuclear Biology: What's Been Most Surprising?

af Dekker, Job, Wysocka, Joanna, Mattaj, Iain, Aiden, Erez Lieberman, Pikaard, Craig
Udgivet 2013

Transferable model for chromosome architecture

af Di Pierro, Michele, Zhang, Bin, Aiden, Erez Lieberman, Wolynes, Peter G., Onuchic, José N.
Udgivet i Proc Natl Acad Sci U S A (2016)

Juicebox.js Provides a Cloud-Based Visualization System for Hi-C Data

af Robinson, James T., Turner, Douglass, Durand, Neva C., Thorvaldsdóttir, Helga, Mesirov, Jill P., Aiden, Erez Lieberman
Udgivet i Cell Syst (2018)

Using deep learning and Google Street View to estimate the demographic makeup of neighborhoods across the United States

af Gebru, Timnit, Krause, Jonathan, Wang, Yilun, Chen, Duyun, Deng, Jia, Aiden, Erez Lieberman, Fei-Fei, Li
Udgivet i Proc Natl Acad Sci U S A (2017)

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

af Durand, Neva C., Robinson, James T., Shamim, Muhammad S., Machol, Ido, Mesirov, Jill P., Lander, Eric S., Aiden, Erez Lieberman
Udgivet i Cell Syst (2016)

Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments

af Durand, Neva C., Shamim, Muhammad S., Machol, Ido, Rao, Suhas S. P., Huntley, Miriam H., Lander, Eric S., Aiden, Erez Lieberman
Udgivet i Cell Syst (2016)

Static and dynamic DNA loops form AP-1 bound activation hubs during macrophage development

af Phanstiel, Douglas H, Van Bortle, Kevin, Spacek, Damek, Hess, Gaelen T, Shamim, Muhammad Saad, Machol, Ido, Love, Michael I, Aiden, Erez Lieberman, Bassik, Michael C, Snyder, Michael P
Udgivet i Mol Cell (2017)

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

af Dudchenko, Olga, Batra, Sanjit S., Omer, Arina D., Nyquist, Sarah K., Hoeger, Marie, Durand, Neva C., Shamim, Muhammad S., Machol, Ido, Lander, Eric S., Aiden, Aviva Presser, Aiden, Erez Lieberman
Udgivet i Science (2017)

The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination

af Zhang, Yu, Zhang, Xuefei, Ba, Zhaoqing, Liang, Zhuoyi, Dring, Eddie, Hu, Hongli, Lou, Jiangman, Kyritsis, Nia, Zurita, Jeffrey, Shamim, Muhammad S., Aiden, Aviva Presser, Aiden, Erez Lieberman, Alt, Frederick W.
Udgivet i Nature (2019)

A three-dimensional map of the human genome at kilobase resolution reveals principles of chromatin looping

af Rao, Suhas S.P., Huntley, Miriam H., Durand, Neva C., Stamenova, Elena K., Bochkov, Ivan D., Robinson, James T., Sanborn, Adrian, Machol, Ido, Omer, Arina D., Lander, Eric S., Aiden, Erez Lieberman
Udgivet i Cell (2014)

Quantitative analysis of culture using millions of digitized books

af Michel, Jean-Baptiste, Shen, Yuan Kui, Aiden, Aviva P., Veres, Adrian, Gray, Matthew K., Pickett, Joseph P., Hoiberg, Dale, Clancy, Dan, Norvig, Peter, Orwant, Jon, Pinker, Steven, Nowak, Martin A., Aiden, Erez Lieberman
Udgivet 2010

CTCF looping is established during gastrulation in medaka embryos

af Nakamura, Ryohei, Motai, Yuichi, Kumagai, Masahiko, Wike, Candice L., Nishiyama, Haruyo, Nakatani, Yoichiro, Durand, Neva C., Kondo, Kaori, Kondo, Takashi, Tsukahara, Tatsuya, Shimada, Atsuko, Cairns, Bradley R., Aiden, Erez Lieberman, Morishita, Shinichi, Takeda, Hiroyuki
Udgivet i Genome Res (2021)

Chromatin architecture transitions from zebrafish sperm through early embryogenesis

af Wike, Candice L., Guo, Yixuan, Tan, Mengyao, Nakamura, Ryohei, Shaw, Dana Klatt, Díaz, Noelia, Whittaker-Tademy, Aneasha F., Durand, Neva C., Aiden, Erez Lieberman, Vaquerizas, Juan M., Grunwald, David, Takeda, Hiroyuki, Cairns, Bradley R.
Udgivet i Genome Res (2021)

Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation

af Senigl, Filip, Maman, Yaakov, Dinesh, Ravi K., Alinikula, Jukka, Seth, Rashu B., Pecnova, Lubomira, Omer, Arina D., Rao, Suhas S.P., Weisz, David, Buerstedde, Jean-Marie, Aiden, Erez Lieberman, Casellas, Rafael, Hejnar, Jiri, Schatz, David G.
Udgivet i Cell Rep (2019)

Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture

af Darrow, Emily M., Huntley, Miriam H., Dudchenko, Olga, Stamenova, Elena K., Durand, Neva C., Sun, Zhuo, Huang, Su-Chen, Sanborn, Adrian L., Machol, Ido, Shamim, Muhammad, Seberg, Andrew P., Lander, Eric S., Chadwick, Brian P., Aiden, Erez Lieberman
Udgivet i Proc Natl Acad Sci U S A (2016)

Cohesin depleted cells rebuild functional nuclear compartments after endomitosis

af Cremer, Marion, Brandstetter, Katharina, Maiser, Andreas, Rao, Suhas S. P., Schmid, Volker J., Guirao-Ortiz, Miguel, Mitra, Namita, Mamberti, Stefania, Klein, Kyle N., Gilbert, David M., Leonhardt, Heinrich, Cardoso, M. Cristina, Aiden, Erez Lieberman, Harz, Hartmann, Cremer, Thomas
Udgivet i Nat Commun (2020)

Genome Organization Drives Chromosome Fragility

af Canela, Andres, Maman, Yaakov, Jung, Seolkyoung, Wong, Nancy, Callen, Elsa, Day, Amanda, Kieffer-Kwon, Kyong-Rim, Pekowska, Aleksandra, Zhang, Hongliang, Rao, Suhas S.P., Huang, Su-Chen, Mckinnon, Peter J., Aplan, Peter D., Pommier, Yves, Aiden, Erez Lieberman, Casellas, Rafael, Nussenzweig, André
Udgivet i Cell (2017)