Identification of conserved domains in the promoter regions of nitric oxide synthase 2: implications for the species-specific transcription and evolutionary differences

Por Rico, Daniel, Vaquerizas, Juan M, Dopazo, Hernán, Boscá, Lisardo
Publicado em 2007

SpeCond: a method to detect condition-specific gene expression

Por Cavalli, Florence MG, Bourgon, Richard, Vaquerizas, Juan M, Luscombe, Nicholas M
Publicado em 2011

TADtool: visual parameter identification for TAD-calling algorithms

Por Kruse, Kai, Hug, Clemens B., Hernández-Rodríguez, Benjamín, Vaquerizas, Juan M.
Publicado no Bioinformatics (2016)

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments

Por Al-Shahrour, Fátima, Minguez, Pablo, Vaquerizas, Juan M., Conde, Lucía, Dopazo, Joaquín
Publicado em 2005

Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets

Por Reimand, Jüri, Vaquerizas, Juan M., Todd, Annabel E., Vilo, Jaak, Luscombe, Nicholas M.
Publicado em 2010

SpeCond: a method to detect condition-specific gene expression

Por Cavalli, Florence MG, Bourgon, Richard, Huber, Wolfgang, Vaquerizas, Juan M, Luscombe, Nicholas M
Publicado em 2011

Nuclear Pore Proteins Nup153 and Megator Define Transcriptionally Active Regions in the Drosophila Genome

Por Vaquerizas, Juan M., Suyama, Ritsuko, Kind, Jop, Miura, Kota, Luscombe, Nicholas M., Akhtar, Asifa
Publicado em 2010

m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence

Por Reimand, Jüri, Aun, Anu, Vilo, Jaak, Vaquerizas, Juan M, Sedman, Juhan, Luscombe, Nicholas M
Publicado em 2012

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes

Por Conde, Lucía, Vaquerizas, Juan M., Ferrer-Costa, Carles, de la Cruz, Xavier, Orozco, Modesto, Dopazo, Joaquín
Publicado em 2005

GEPAS: a web-based resource for microarray gene expression data analysis

Por Herrero, Javier, Al-Shahrour, Fátima, Díaz-Uriarte, Ramón, Mateos, Álvaro, Vaquerizas, Juan M., Santoyo, Javier, Dopazo, Joaquín
Publicado em 2003

PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level

Por Conde, Lucía, Vaquerizas, Juan M., Santoyo, Javier, Al-Shahrour, Fátima, Ruiz-Llorente, Sergio, Robledo, Mercedes, Dopazo, Joaquín
Publicado em 2004

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes

Por Conde, Lucía, Vaquerizas, Juan M., Dopazo, Hernán, Arbiza, Leonardo, Reumers, Joke, Rousseau, Frederic, Schymkowitz, Joost, Dopazo, Joaquín
Publicado em 2006

Dual randomization of oligonucleotides to reduce the bias in ribosome-profiling libraries

Por Lecanda, Aarón, Nilges, Benedikt S., Sharma, Puneet, Nedialkova, Danny D., Schwarz, Juliane, Vaquerizas, Juan M., Leidel, Sebastian A.
Publicado no Methods (2016)

New challenges in gene expression data analysis and the extended GEPAS

Por Herrero, Javier, Vaquerizas, Juan M., Al-Shahrour, Fátima, Conde, Lucía, Mateos, Álvaro, Díaz-Uriarte, Javier Santoyo Ramón, Dopazo, Joaquín
Publicado em 2004

The NSL Complex Regulates Housekeeping Genes in Drosophila

Por Lam, Kin Chung, Mühlpfordt, Friederike, Vaquerizas, Juan M., Raja, Sunil Jayaramaiah, Holz, Herbert, Luscombe, Nicholas M., Manke, Thomas, Akhtar, Asifa
Publicado em 2012

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data

Por Vaquerizas, Juan M., Conde, Lucía, Yankilevich, Patricio, Cabezón, Amaya, Minguez, Pablo, Díaz-Uriarte, Ramón, Al-Shahrour, Fátima, Herrero, Javier, Dopazo, Joaquín
Publicado em 2005

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments

Por Al-Shahrour, Fátima, Minguez, Pablo, Tárraga, Joaquín, Montaner, David, Alloza, Eva, Vaquerizas, Juan M., Conde, Lucía, Blaschke, Christian, Vera, Javier, Dopazo, Joaquín
Publicado em 2006

A molecular roadmap for the emergence of early-embryonic-like cells in culture

Por Rodriguez-Terrones, Diego, Gaume, Xavier, Ishiuchi, Takashi, Weiss, Amélie, Kopp, Arnaud, Kruse, Kai, Penning, Audrey, Vaquerizas, Juan M., Brino, Laurent, Torres-Padilla, Maria-Elena
Publicado no Nat Genet (2017)

Transcriptional regulation of endothelial cell behavior during sprouting angiogenesis

Por Jeong, Hyun-Woo, Hernández-Rodríguez, Benjamín, Kim, JungMo, Kim, Kee-Pyo, Enriquez-Gasca, Rocio, Yoon, Juyong, Adams, Susanne, Schöler, Hans R., Vaquerizas, Juan M., Adams, Ralf H.
Publicado no Nat Commun (2017)

Next station in microarray data analysis: GEPAS

Por Montaner, David, Tárraga, Joaquín, Huerta-Cepas, Jaime, Burguet, Jordi, Vaquerizas, Juan M., Conde, Lucía, Minguez, Pablo, Vera, Javier, Mukherjee, Sach, Valls, Joan, Pujana, Miguel A. G., Alloza, Eva, Herrero, Javier, Al-Shahrour, Fátima, Dopazo, Joaquín
Publicado em 2006