ETE: a python Environment for Tree Exploration

por Huerta-Cepas, Jaime, Dopazo, Joaquín, Gabaldón, Toni
Publicado em 2010

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

por Huerta-Cepas, Jaime, Serra, François, Bork, Peer
Publicado no Mol Biol Evol (2016)

A Critical Review on the Use of Support Values in Tree Viewers and Bioinformatics Toolkits

por Czech, Lucas, Huerta-Cepas, Jaime, Stamatakis, Alexandros
Publicado no Mol Biol Evol (2017)

MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score

por Pryszcz, Leszek P., Huerta-Cepas, Jaime, Gabaldón, Toni
Publicado em 2011

PhylomeDB: a database for genome-wide collections of gene phylogenies

por Huerta-Cepas, Jaime, Bueno, Anibal, Dopazo, Joaquín, Gabaldón, Toni
Publicado em 2008

The human phylome

por Huerta-Cepas, Jaime, Dopazo, Hernán, Dopazo, Joaquín, Gabaldón, Toni
Publicado em 2007

Metabolic anchor reactions for robust biorefining

por Jouhten, Paula, Huerta-Cepas, Jaime, Bork, Peer, Patil, Kiran Raosaheb
Publicado no Metab Eng (2017)

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome

por Huerta-Cepas, Jaime, Capella-Gutiérrez, Salvador, Pryszcz, Leszek P., Marcet-Houben, Marina, Gabaldón, Toni
Publicado em 2014

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics

por Tárraga, Joaquín, Medina, Ignacio, Arbiza, Leonardo, Huerta-Cepas, Jaime, Gabaldón, Toni, Dopazo, Joaquín, Dopazo, Hernán
Publicado em 2007

NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language

por Coelho, Luis Pedro, Alves, Renato, Monteiro, Paulo, Huerta-Cepas, Jaime, Freitas, Ana Teresa, Bork, Peer
Publicado no Microbiome (2019)

From genes to functional classes in the study of biological systems

por Huerta-Cepas Jaime, Dopazo Hernán, Arbiza Leonardo, Al-Shahrour Fátima, Mínguez Pablo, Montaner David, Dopazo Joaquín
Publicado em 2007-04-01

From genes to functional classes in the study of biological systems

por Al-Shahrour, Fátima, Arbiza, Leonardo, Dopazo, Hernán, Huerta-Cepas, Jaime, Mínguez, Pablo, Montaner, David, Dopazo, Joaquín
Publicado em 2007

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

por Minguez, Pablo, Letunic, Ivica, Parca, Luca, Garcia-Alonso, Luz, Dopazo, Joaquin, Huerta-Cepas, Jaime, Bork, Peer
Publicado no Nucleic Acids Res (2014)

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes

por Mende, Daniel R., Letunic, Ivica, Huerta-Cepas, Jaime, Li, Simone S., Forslund, Kristoffer, Sunagawa, Shinichi, Bork, Peer
Publicado no Nucleic Acids Res (2017)

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions

por Huerta-Cepas, Jaime, Capella-Gutierrez, Salvador, Pryszcz, Leszek P., Denisov, Ivan, Kormes, Diego, Marcet-Houben, Marina, Gabaldón, Toni
Publicado em 2011

Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

por Huerta-Cepas, Jaime, Forslund, Kristoffer, Coelho, Luis Pedro, Szklarczyk, Damian, Jensen, Lars Juhl, von Mering, Christian, Bork, Peer
Publicado no Mol Biol Evol (2017)

Evidence for systems-level molecular mechanisms of tumorigenesis

por Hernández, Pilar, Huerta-Cepas, Jaime, Montaner, David, Al-Shahrour, Fátima, Valls, Joan, Gómez, Laia, Capellá, Gabriel, Dopazo, Joaquín, Pujana, Miguel Angel
Publicado em 2007

Comparative transcriptomics of early dipteran development

por Jiménez-Guri, Eva, Huerta-Cepas, Jaime, Cozzuto, Luca, Wotton, Karl R, Kang, Hui, Himmelbauer, Heinz, Roma, Guglielmo, Gabaldón, Toni, Jaeger, Johannes
Publicado em 2013

ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

por Baa-Puyoulet, Patrice, Parisot, Nicolas, Febvay, Gérard, Huerta-Cepas, Jaime, Vellozo, Augusto F., Gabaldón, Toni, Calevro, Federica, Charles, Hubert, Colella, Stefano
Publicado no Database (Oxford) (2016)

Prokaryotic ancestry and gene fusion of a dual localized peroxiredoxin in malaria parasites

por Djuika, Carine F., Huerta-Cepas, Jaime, Przyborski, Jude M., Deil, Sophia, Sanchez, Cecilia P., Doerks, Tobias, Bork, Peer, Lanzer, Michael, Deponte, Marcel
Publicado no Microb Cell (2015)