Matrix-Assisted Laser Desorption/Ionisation, Time-of-Flight Mass Spectrometry in Genomics Research

door Ragoussis, Jiannis, Elvidge, Gareth P, Kaur, Kulvinder, Colella, Stefano
Gepubliceerd in 2006

DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models

door Lambert, Ilana, Paysant-Le Roux, Christine, Colella, Stefano, Martin-Magniette, Marie-Laure
Gepubliceerd in Plant Methods (2020)

Altered Intra-Nuclear Organisation of Heterochromatin and Genes in ICF Syndrome

door Jefferson, Andrew, Colella, Stefano, Moralli, Daniela, Wilson, Natalie, Yusuf, Mohammed, Gimelli, Giorgio, Ragoussis, Jiannis, Volpi, Emanuela V.
Gepubliceerd in 2010

Multimodal dynamic response of the Buchnera aphidicola pLeu plasmid to variations in leucine demand of its host, the pea aphid Acyrthosiphon pisum

door Viñuelas, José, Febvay, Gérard, Duport, Gabrielle, Colella, Stefano, Fayard, Jean-Michel, Charles, Hubert, Rahbé, Yvan, Calevro, Federica
Gepubliceerd in 2011

Genome-Wide Hypomethylation in Head and Neck Cancer Is More Pronounced in HPV-Negative Tumors and Is Associated with Genomic Instability

door Richards, Kristy L., Zhang, Baili, Baggerly, Keith A., Colella, Stefano, Lang, James C., Schuller, David E., Krahe, Ralf
Gepubliceerd in 2009

Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids

door Simonet, Pierre, Gaget, Karen, Parisot, Nicolas, Duport, Gabrielle, Rey, Marjolaine, Febvay, Gérard, Charles, Hubert, Callaerts, Patrick, Colella, Stefano, Calevro, Federica
Gepubliceerd in Sci Rep (2016)

MOLECULAR SIGNATURES OF METASTASIS IN HEAD AND NECK CANCER

door Colella, Stefano, Richards, Kristy L., Bachinski, Linda L., Baggerly, Keith A., Tsavachidis, Spiridon, Lang, James C., Schuller, David E., Krahe, Ralf
Gepubliceerd in 2008

Direct flow cytometry measurements reveal a fine-tuning of symbiotic cell dynamics according to the host developmental needs in aphid symbiosis

door Simonet, Pierre, Duport, Gabrielle, Gaget, Karen, Weiss-Gayet, Michèle, Colella, Stefano, Febvay, Gérard, Charles, Hubert, Viñuelas, José, Heddi, Abdelaziz, Calevro, Federica
Gepubliceerd in Sci Rep (2016)

ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

door Baa-Puyoulet, Patrice, Parisot, Nicolas, Febvay, Gérard, Huerta-Cepas, Jaime, Vellozo, Augusto F., Gabaldón, Toni, Calevro, Federica, Charles, Hubert, Colella, Stefano
Gepubliceerd in Database (Oxford) (2016)

QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data

door Colella, Stefano, Yau, Christopher, Taylor, Jennifer M., Mirza, Ghazala, Butler, Helen, Clouston, Penny, Bassett, Anne S., Seller, Anneke, Holmes, Christopher C., Ragoussis, Jiannis
Gepubliceerd in 2007

A statistical approach for detecting genomic aberrations in heterogeneous tumor samples from single nucleotide polymorphism genotyping data

door Yau, Christopher, Mouradov, Dmitri, Jorissen, Robert N, Colella, Stefano, Mirza, Ghazala, Steers, Graham, Harris, Adrian, Ragoussis, Jiannis, Sieber, Oliver, Holmes, Christopher C
Gepubliceerd in 2010

A Genomic Reappraisal of Symbiotic Function in the Aphid/Buchnera Symbiosis: Reduced Transporter Sets and Variable Membrane Organisations

door Charles, Hubert, Balmand, Séverine, Lamelas, Araceli, Cottret, Ludovic, Pérez-Brocal, Vicente, Burdin, Béatrice, Latorre, Amparo, Febvay, Gérard, Colella, Stefano, Calevro, Federica, Rahbé, Yvan
Gepubliceerd in 2011

Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum

door Colella, Stefano, Parisot, Nicolas, Simonet, Pierre, Gaget, Karen, Duport, Gabrielle, Baa-Puyoulet, Patrice, Rahbé, Yvan, Charles, Hubert, Febvay, Gérard, Callaerts, Patrick, Calevro, Federica
Gepubliceerd in Front Physiol (2018)

Tyrosine pathway regulation is host-mediated in the pea aphid symbiosis during late embryonic and early larval development

door Rabatel, Andréane, Febvay, Gérard, Gaget, Karen, Duport, Gabrielle, Baa-Puyoulet, Patrice, Sapountzis, Panagiotis, Bendridi, Nadia, Rey, Marjolaine, Rahbé, Yvan, Charles, Hubert, Calevro, Federica, Colella, Stefano
Gepubliceerd in 2013

Responses of mature symbiotic nodules to the whole-plant systemic nitrogen signaling

door Lambert, Ilana, Pervent, Marjorie, Le Queré, Antoine, Clément, Gilles, Tauzin, Marc, Severac, Dany, Benezech, Claire, Tillard, Pascal, Martin-Magniette, Marie-Laure, Colella, Stefano, Lepetit, Marc
Gepubliceerd in J Exp Bot (2020)

CycADS: an annotation database system to ease the development and update of BioCyc databases

door Vellozo, Augusto F., Véron, Amélie S., Baa-Puyoulet, Patrice, Huerta-Cepas, Jaime, Cottret, Ludovic, Febvay, Gérard, Calevro, Federica, Rahbé, Yvan, Douglas, Angela E., Gabaldón, Toni, Sagot, Marie-France, Charles, Hubert, Colella, Stefano
Gepubliceerd in 2011

Host‐specific competitiveness to form nodules in Rhizobium leguminosarum symbiovar viciae

door Boivin, Stéphane, Ait Lahmidi, Nassima, Sherlock, David, Bonhomme, Maxime, Dijon, Doriane, Heulin‐Gotty, Karine, Le‐Queré, Antoine, Pervent, Marjorie, Tauzin, Marc, Carlsson, Georg, Jensen, Erik, Journet, Etienne‐Pascal, Lopez‐Bellido, Raphael, Seidenglanz, Marek, Marinkovic, Jelena, Colella, Stefano, Brunel, Brigitte, Young, Peter, Lepetit, Marc
Gepubliceerd in New Phytol (2020)

Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

door Mathers, Thomas C., Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T., Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J., Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon, Price, Daniel R. G., Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C. C., van Oosterhout, Cock, Swarbreck, David, Hogenhout, Saskia A.
Gepubliceerd in Genome Biol (2017)

Erratum to: Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species

door Mathers, Thomas C., Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T., Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J., Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon, Price, Daniel R. G., Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C. C., van Oosterhout, Cock, Swarbreck, David, Hogenhout, Saskia A.
Gepubliceerd in Genome Biol (2017)

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

door Panfilio, Kristen A., Vargas Jentzsch, Iris M., Benoit, Joshua B., Erezyilmaz, Deniz, Suzuki, Yuichiro, Colella, Stefano, Robertson, Hugh M., Poelchau, Monica F., Waterhouse, Robert M., Ioannidis, Panagiotis, Weirauch, Matthew T., Hughes, Daniel S. T., Murali, Shwetha C., Werren, John H., Jacobs, Chris G. C., Duncan, Elizabeth J., Armisén, David, Vreede, Barbara M. I., Baa-Puyoulet, Patrice, Berger, Chloé S., Chang, Chun-che, Chao, Hsu, Chen, Mei-Ju M., Chen, Yen-Ta, Childers, Christopher P., Chipman, Ariel D., Cridge, Andrew G., Crumière, Antonin J. J., Dearden, Peter K., Didion, Elise M., Dinh, Huyen, Doddapaneni, Harsha Vardhan, Dolan, Amanda, Dugan, Shannon, Extavour, Cassandra G., Febvay, Gérard, Friedrich, Markus, Ginzburg, Neta, Han, Yi, Heger, Peter, Holmes, Christopher J., Horn, Thorsten, Hsiao, Yi-min, Jennings, Emily C., Johnston, J. Spencer, Jones, Tamsin E., Jones, Jeffery W., Khila, Abderrahman, Koelzer, Stefan, Kovacova, Viera, Leask, Megan, Lee, Sandra L., Lee, Chien-Yueh, Lovegrove, Mackenzie R., Lu, Hsiao-ling, Lu, Yong, Moore, Patricia J., Munoz-Torres, Monica C., Muzny, Donna M., Palli, Subba R., Parisot, Nicolas, Pick, Leslie, Porter, Megan L., Qu, Jiaxin, Refki, Peter N., Richter, Rose, Rivera-Pomar, Rolando, Rosendale, Andrew J., Roth, Siegfried, Sachs, Lena, Santos, M. Emília, Seibert, Jan, Sghaier, Essia, Shukla, Jayendra N., Stancliffe, Richard J., Tidswell, Olivia, Traverso, Lucila, van der Zee, Maurijn, Viala, Séverine, Worley, Kim C., Zdobnov, Evgeny M., Gibbs, Richard A., Richards, Stephen
Gepubliceerd in Genome Biol (2019)