Space, time and microdiversity: towards a resolution revolution in microbiomics

Por Paoli, Lucas, Sunagawa, Shinichi
Publicado no Environ Microbiol Rep (2020)

Threatened Corals Provide Underexplored Microbial Habitats

Por Sunagawa, Shinichi, Woodley, Cheryl M., Medina, Mónica
Publicado em 2010

Computational eco-systems biology in Tara Oceans: translating data into knowledge

Por Sunagawa, Shinichi, Karsenti, Eric, Bowler, Chris, Bork, Peer
Publicado no Mol Syst Biol (2015)

RNase H As Gene Modifier, Driver of Evolution and Antiviral Defense

Por Moelling, Karin, Broecker, Felix, Russo, Giancarlo, Sunagawa, Shinichi
Publicado no Front Microbiol (2017)

Hyperthermic stress-induced increase in the expression of glutamate-cysteine ligase and glutathione levels in the symbiotic sea anemone Aiptasia pallida

Por Sunagawa, Shinichi, Choi, Jinah, Forman, Henry Jay, Medina, Mónica
Publicado em 2008

Inter-individual differences in the gene content of human gut bacterial species

Por Zhu, Ana, Sunagawa, Shinichi, Mende, Daniel R, Bork, Peer
Publicado no Genome Biol (2015)

Gonadal transcriptomics elucidate patterns of adaptive evolution within marine rockfishes (Sebastes)

Por Heras, Joseph, McClintock, Kelly, Sunagawa, Shinichi, Aguilar, Andres
Publicado no BMC Genomics (2015)

Identification and Gene Expression Analysis of a Taxonomically Restricted Cysteine-Rich Protein Family in Reef-Building Corals

Por Sunagawa, Shinichi, DeSalvo, Michael K., Voolstra, Christian R., Reyes-Bermudez, Alejandro, Medina, Mónica
Publicado em 2009

metaSNV: A tool for metagenomic strain level analysis

Por Costea, Paul Igor, Munch, Robin, Coelho, Luis Pedro, Paoli, Lucas, Sunagawa, Shinichi, Bork, Peer
Publicado no PLoS One (2017)

Consistent host and organ occupancy of phyllosphere bacteria in a community of wild herbaceous plant species

Por Massoni, Julien, Bortfeld-Miller, Miriam, Jardillier, Ludwig, Salazar, Guillem, Sunagawa, Shinichi, Vorholt, Julia A.
Publicado no ISME J (2019)

Country-specific antibiotic use practices impact the human gut resistome

Por Forslund, Kristoffer, Sunagawa, Shinichi, Kultima, Jens Roat, Mende, Daniel R., Arumugam, Manimozhiyan, Typas, Athanasios, Bork, Peer
Publicado em 2013

Global genetic capacity for mixotrophy in marine picocyanobacteria

Por Yelton, Alexis P, Acinas, Silvia G, Sunagawa, Shinichi, Bork, Peer, Pedrós-Alió, Carlos, Chisholm, Sallie W
Publicado no ISME J (2016)

proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes

Por Mende, Daniel R., Letunic, Ivica, Huerta-Cepas, Jaime, Li, Simone S., Forslund, Kristoffer, Sunagawa, Shinichi, Bork, Peer
Publicado no Nucleic Acids Res (2017)

Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation

Por Zhang, Jianbo, Lacroix, Christophe, Wortmann, Esther, Ruscheweyh, Hans-Joachim, Sunagawa, Shinichi, Sturla, Shana J., Schwab, Clarissa
Publicado no BMC Microbiol (2019)

Synthetic microbiota reveal priority effects and keystone strains in the Arabidopsis phyllosphere

Por Carlström, Charlotte I., Field, Christopher M., Bortfeld-Miller, Miriam, Müller, Barbara, Sunagawa, Shinichi, Vorholt, Julia A.
Publicado no Nat Ecol Evol (2019)

The Porcelain Crab Transcriptome and PCAD, the Porcelain Crab Microarray and Sequence Database

Por Tagmount, Abderrahmane, Wang, Mei, Lindquist, Erika, Tanaka, Yoshihiro, Teranishi, Kristen S., Sunagawa, Shinichi, Wong, Mike, Stillman, Jonathon H.
Publicado em 2010

Classification and quantification of bacteriophage taxa in human gut metagenomes

Por Waller, Alison S, Yamada, Takuji, Kristensen, David M, Kultima, Jens Roat, Sunagawa, Shinichi, Koonin, Eugene V, Bork, Peer
Publicado em 2014

Classification and quantification of bacteriophage taxa in human gut metagenomes

Por Waller, Alison S, Yamada, Takuji, Kristensen, David M, Kultima, Jens Roat, Sunagawa, Shinichi, Koonin, Eugene V, Bork, Peer
Publicado em 2014

Temporal and technical variability of human gut metagenomes

Por Voigt, Anita Y, Costea, Paul I, Kultima, Jens Roat, Li, Simone S, Zeller, Georg, Sunagawa, Shinichi, Bork, Peer
Publicado no Genome Biol (2015)

Quantitative 3D-imaging for cell biology and ecology of environmental microbial eukaryotes

Por Colin, Sebastien, Coelho, Luis Pedro, Sunagawa, Shinichi, Bowler, Chris, Karsenti, Eric, Bork, Peer, Pepperkok, Rainer, de Vargas, Colomban
Publicado no eLife (2017)