PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins

od Minguez, Pablo, Letunic, Ivica, Parca, Luca, Bork, Peer
Izdano 2013

Quantifying compartment‐associated variations of protein abundance in proteomics data

od Parca, Luca, Beck, Martin, Bork, Peer, Ori, Alessandro
Izdano u Mol Syst Biol (2018)

Nucleos: a web server for the identification of nucleotide-binding sites in protein structures

od Parca, Luca, Ferré, Fabrizio, Ausiello, Gabriele, Helmer-Citterich, Manuela
Izdano 2013

Phosphate binding sites identification in protein structures

od Parca, Luca, Gherardini, Pier Federico, Helmer-Citterich, Manuela, Ausiello, Gabriele
Izdano 2011

Phosfinder: a web server for the identification of phosphate-binding sites on protein structures

od Parca, Luca, Mangone, Iolanda, Gherardini, Pier Federico, Ausiello, Gabriele, Helmer-Citterich, Manuela
Izdano 2011

MicroRNAs and Long Non-Coding RNAs as Potential Candidates to Target Specific Motifs of SARS-CoV-2

od Natarelli, Lucia, Parca, Luca, Mazza, Tommaso, Weber, Christian, Virgili, Fabio, Fratantonio, Deborah
Izdano u Noncoding RNA (2021)

Discovering sequence and structure landscapes in RNA interaction motifs

od Adinolfi, Marta, Pietrosanto, Marco, Parca, Luca, Ausiello, Gabriele, Ferrè, Fabrizio, Helmer-Citterich, Manuela
Izdano u Nucleic Acids Res (2019)

Histone Deacetylase Inhibitors (HDACi) Cause the Selective Depletion of Bromodomain Containing Proteins (BCPs)

od Mackmull, Marie-Therese, Iskar, Murat, Parca, Luca, Singer, Stephan, Bork, Peer, Ori, Alessandro, Beck, Martin
Izdano u Mol Cell Proteomics (2015)

Identification of Nucleotide-Binding Sites in Protein Structures: A Novel Approach Based on Nucleotide Modularity

od Parca, Luca, Gherardini, Pier Federico, Truglio, Mauro, Mangone, Iolanda, Ferrè, Fabrizio, Helmer-Citterich, Manuela, Ausiello, Gabriele
Izdano 2012

PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins

od Minguez, Pablo, Letunic, Ivica, Parca, Luca, Garcia-Alonso, Luz, Dopazo, Joaquin, Huerta-Cepas, Jaime, Bork, Peer
Izdano u Nucleic Acids Res (2014)

Kinome-wide identification of phosphorylation networks in eukaryotic proteomes

od Parca, Luca, Ariano, Bruno, Cabibbo, Andrea, Paoletti, Marco, Tamburrini, Annalaura, Palmeri, Antonio, Ausiello, Gabriele, Helmer-Citterich, Manuela
Izdano u Bioinformatics (2019)

Phosphorylation within Intrinsic Disordered Region Discriminates Histone Variant macroH2A1 Splicing Isoforms—macroH2A1.1 and macroH2A1.2

od Giallongo, Sebastiano, Lo Re, Oriana, Lochmanová, Gabriela, Parca, Luca, Petrizzelli, Francesco, Zdráhal, Zbyněk, Mazza, Tommaso, Vinciguerra, Manlio
Izdano u Biology (Basel) (2021)

Pyntacle: a parallel computing-enabled framework for large-scale network biology analysis

od Parca, Luca, Truglio, Mauro, Biagini, Tommaso, Castellana, Stefano, Petrizzelli, Francesco, Capocefalo, Daniele, Jordán, Ferenc, Carella, Massimo, Mazza, Tommaso
Izdano u Gigascience (2020)

Spatiotemporal variation of mammalian protein complex stoichiometries

od Ori, Alessandro, Iskar, Murat, Buczak, Katarzyna, Kastritis, Panagiotis, Parca, Luca, Andrés-Pons, Amparo, Singer, Stephan, Bork, Peer, Beck, Martin
Izdano u Genome Biol (2016)

MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits

od Castellana, Stefano, Biagini, Tommaso, Petrizzelli, Francesco, Parca, Luca, Panzironi, Noemi, Caputo, Viviana, Vescovi, Angelo Luigi, Carella, Massimo, Mazza, Tommaso
Izdano u Nucleic Acids Res (2020)

Modeling cancer drug response through drug-specific informative genes

od Parca, Luca, Pepe, Gerardo, Pietrosanto, Marco, Galvan, Giulio, Galli, Leonardo, Palmeri, Antonio, Sciandrone, Marco, Ferrè, Fabrizio, Ausiello, Gabriele, Helmer-Citterich, Manuela
Izdano u Sci Rep (2019)

Mechanisms of pathogenesis of missense mutations on the KDM6A-H3 interaction in type 2 Kabuki Syndrome

od Petrizzelli, Francesco, Biagini, Tommaso, Barbieri, Alessandro, Parca, Luca, Panzironi, Noemi, Castellana, Stefano, Caputo, Viviana, Vescovi, Angelo Luigi, Carella, Massimo, Mazza, Tommaso
Izdano u Comput Struct Biotechnol J (2020)

Deciphering a global network of functionally associated post-translational modifications

od Minguez, Pablo, Parca, Luca, Diella, Francesca, Mende, Daniel R, Kumar, Runjun, Helmer-Citterich, Manuela, Gavin, Anne-Claude, van Noort, Vera, Bork, Peer
Izdano 2012

Transcriptome and Gene Fusion Analysis of Synchronous Lesions Reveals lncMRPS31P5 as a Novel Transcript Involved in Colorectal Cancer

od Panza, Anna, Castellana, Stefano, Biscaglia, Giuseppe, Piepoli, Ada, Parca, Luca, Gentile, Annamaria, Latiano, Anna, Mazza, Tommaso, Perri, Francesco, Andriulli, Angelo, Palmieri, Orazio
Izdano u Int J Mol Sci (2020)

Variants in MHY7 Gene Cause Arrhythmogenic Cardiomyopathy

od Ferradini, Valentina, Parca, Luca, Martino, Annamaria, Lanzillo, Chiara, Silvetti, Elisa, Calò, Leonardo, Caselli, Stefano, Novelli, Giuseppe, Helmer-Citterich, Manuela, Sangiuolo, Federica Carla, Mango, Ruggiero
Izdano u Genes (Basel) (2021)