RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

nork Stamatakis, Alexandros
Argitaratua 2014

Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures

nork Stamatakis, Alexandros, Ott, Michael
Argitaratua 2008

Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data

nork Stamatakis, Alexandros, Alachiotis, Nikolaos
Argitaratua 2010

Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples

nork Czech, Lucas, Stamatakis, Alexandros
Argitaratua izan da PLoS One (2019)

Root Digger: a root placement program for phylogenetic trees

nork Bettisworth, Ben, Stamatakis, Alexandros
Argitaratua izan da BMC Bioinformatics (2021)

Rapid forward-in-time simulation at the chromosome and genome level

nork Aberer, Andre J, Stamatakis, Alexandros
Argitaratua 2013

The State of Software for Evolutionary Biology

nork Darriba, Diego, Flouri, Tomáš, Stamatakis, Alexandros
Argitaratua izan da Mol Biol Evol (2018)

Methods for automatic reference trees and multilevel phylogenetic placement

nork Czech, Lucas, Barbera, Pierre, Stamatakis, Alexandros
Argitaratua izan da Bioinformatics (2019)

Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data

nork Czech, Lucas, Barbera, Pierre, Stamatakis, Alexandros
Argitaratua izan da Bioinformatics (2020)

Maximum Likelihood Analyses of 3,490 rbcL Sequences: Scalability of Comprehensive Inference versus Group-Specific Taxon Sampling

nork Stamatakis, Alexandros, Göker, Markus, Grimm, Guido W.
Argitaratua 2010

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

nork Berger, Simon A., Krompass, Denis, Stamatakis, Alexandros
Argitaratua 2011

Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel

nork Alachiotis, Nikolaos, Berger, Simon A, Stamatakis, Alexandros
Argitaratua 2012

Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice

nork Aberer, Andre J., Krompass, Denis, Stamatakis, Alexandros
Argitaratua 2013

ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era

nork Aberer, Andre J., Kobert, Kassian, Stamatakis, Alexandros
Argitaratua 2014

An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees

nork Aberer, Andre J., Stamatakis, Alexandros, Ronquist, Fredrik
Argitaratua izan da Syst Biol (2016)

A Critical Review on the Use of Support Values in Tree Viewers and Bioinformatics Toolkits

nork Czech, Lucas, Huerta-Cepas, Jaime, Stamatakis, Alexandros
Argitaratua izan da Mol Biol Evol (2017)

ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes

nork Morel, Benoit, Kozlov, Alexey M, Stamatakis, Alexandros
Argitaratua izan da Bioinformatics (2019)

A fast and memory-efficient implementation of the transfer bootstrap

nork Lutteropp, Sarah, Kozlov, Alexey M, Stamatakis, Alexandros
Argitaratua izan da Bioinformatics (2020)

Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees

nork Izquierdo-Carrasco, Fernando, Smith, Stephen A, Stamatakis, Alexandros
Argitaratua 2011

SweeD: Likelihood-Based Detection of Selective Sweeps in Thousands of Genomes

nork Pavlidis, Pavlos, Živković, Daniel, Stamatakis, Alexandros, Alachiotis, Nikolaos
Argitaratua 2013