i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly

Por Imrichová, Hana, Hulselmans, Gert, Kalender Atak, Zeynep, Potier, Delphine, Aerts, Stein
Publicado no Nucleic Acids Res (2015)

Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models

Por Svetlichnyy, Dmitry, Imrichova, Hana, Fiers, Mark, Kalender Atak, Zeynep, Aerts, Stein
Publicado no PLoS Comput Biol (2015)

Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks

Por Kalender Atak, Zeynep, Imrichova, Hana, Svetlichnyy, Dmitry, Hulselmans, Gert, Christiaens, Valerie, Reumers, Joke, Ceulemans, Hugo, Aerts, Stein
Publicado no Genome Med (2017)

Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic

Por Verfaillie, Annelien, Svetlichnyy, Dmitry, Imrichova, Hana, Davie, Kristofer, Fiers, Mark, Kalender Atak, Zeynep, Hulselmans, Gert, Christiaens, Valerie, Aerts, Stein
Publicado no Genome Res (2016)

Functional E3 ligase hotspots and resistance mechanisms to small-molecule degraders

Por Hanzl, Alexander, Casement, Ryan, Imrichova, Hana, Hughes, Scott J., Barone, Eleonora, Testa, Andrea, Bauer, Sophie, Wright, Jane, Brand, Matthias, Ciulli, Alessio, Winter, Georg E.
Publicado no Nat Chem Biol (2023)

Breast Cancer Classification Based on Proteotypes Obtained by SWATH Mass Spectrometry

Por Bouchal, Pavel, Schubert, Olga T., Faktor, Jakub, Capkova, Lenka, Imrichova, Hana, Zoufalova, Karolina, Paralova, Vendula, Hrstka, Roman, Liu, Yansheng, Ebhardt, Holger Alexander, Budinska, Eva, Nenutil, Rudolf, Aebersold, Ruedi
Publicado no Cell Rep (2019)

Transcription factor MITF and remodeller BRG1 define chromatin organisation at regulatory elements in melanoma cells

Por Laurette, Patrick, Strub, Thomas, Koludrovic, Dana, Keime, Céline, Le Gras, Stéphanie, Seberg, Hannah, Van Otterloo, Eric, Imrichova, Hana, Siddaway, Robert, Aerts, Stein, Cornell, Robert A, Mengus, Gabrielle, Davidson, Irwin
Publicado no eLife (2015)

Combined Proteomics and Transcriptomics Identifies Carboxypeptidase B1 and Nuclear Factor κB (NF-κB) Associated Proteins as Putative Biomarkers of Metastasis in Low Grade Breast Ca...

Por Bouchal, Pavel, Dvořáková, Monika, Roumeliotis, Theodoros, Bortlíček, Zbyněk, Ihnatová, Ivana, Procházková, Iva, Ho, Jenny T. C., Maryáš, Josef, Imrichová, Hana, Budinská, Eva, Vyzula, Rostislav, Garbis, Spiros D., Vojtěšek, Bořivoj, Nenutil, Rudolf
Publicado no Mol Cell Proteomics (2015)

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Por Janky, Rekin's, Verfaillie, Annelien, Imrichová, Hana, Van de Sande, Bram, Standaert, Laura, Christiaens, Valerie, Hulselmans, Gert, Herten, Koen, Naval Sanchez, Marina, Potier, Delphine, Svetlichnyy, Dmitry, Kalender Atak, Zeynep, Fiers, Mark, Marine, Jean-Christophe, Aerts, Stein
Publicado em 2014

The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

Por Jacobs, Jelle, Atkins, Mardelle, Davie, Kristofer, Imrichova, Hana, Romanelli, Lucia, Christiaens, Valerie, Hulselmans, Gert, Potier, Delphine, Wouters, Jasper, Taskiran, Ibrahim Ihsan, Paciello, Giulia, González-Blas, Carmen Bravo, Koldere, Duygu, Aibar, Sara, Halder, Georg, Aerts, Stein
Publicado no Nat Genet (2018)

SCENIC: Single-cell regulatory network inference and clustering

Por Aibar, Sara, González-Blas, Carmen Bravo, Moerman, Thomas, Huynh-Thu, Vân Anh, Imrichova, Hana, Hulselmans, Gert, Rambow, Florian, Marine, Jean-Christophe, Geurts, Pierre, Aerts, Jan, van den Oord, Joost, Atak, Zeynep Kalender, Wouters, Jasper, Aerts, Stein
Publicado no Nat Methods (2017)

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

Por Verfaillie, Annelien, Imrichova, Hana, Atak, Zeynep Kalender, Dewaele, Michael, Rambow, Florian, Hulselmans, Gert, Christiaens, Valerie, Svetlichnyy, Dmitry, Luciani, Flavie, Van den Mooter, Laura, Claerhout, Sofie, Fiers, Mark, Journe, Fabrice, Ghanem, Ghanem-Elias, Herrmann, Carl, Halder, Georg, Marine, Jean-Christophe, Aerts, Stein
Publicado no Nat Commun (2015)

Rational discovery of molecular glue degraders via scalable chemical profiling

Por Mayor-Ruiz, Cristina, Bauer, Sophie, Brand, Matthias, Kozicka, Zuzanna, Siklos, Marton, Imrichova, Hana, Kaltheuner, Ines H., Hahn, Elisa, Seiler, Kristina, Koren, Anna, Petzold, Georg, Fellner, Michaela, Bock, Christoph, Müller, André C., Zuber, Johannes, Geyer, Matthias, Thomä, Nicolas H., Kubicek, Stefan, Winter, Georg E.
Publicado no Nat Chem Biol (2020)

Acute BAF perturbation causes immediate changes in chromatin accessibility

Por Schick, Sandra, Grosche, Sarah, Kohl, Katharina Eva, Drpic, Danica, Jaeger, Martin G., Marella, Nara C., Imrichova, Hana, Lin, Jung-Ming G., Hofstätter, Gerald, Schuster, Michael, Rendeiro, André F., Koren, Anna, Petronczki, Mark, Bock, Christoph, Müller, André C., Winter, Georg E., Kubicek, Stefan
Publicado no Nat Genet (2021)

Selective Mediator-dependence of cell type-specifying transcription

Por Jaeger, Martin G., Schwalb, Björn, Mackowiak, Sebastian D., Velychko, Taras, Hanzl, Alexander, Imrichova, Hana, Brand, Matthias, Agerer, Benedikt, Chorn, Someth, Nabet, Behnam, Ferguson, Fleur M., Müller, André C., Bergthaler, Andreas, Gray, Nathanael S., Bradner, James E., Bock, Christoph, Hnisz, Denes, Cramer, Patrick, Winter, Georg E.
Publicado no Nat Genet (2020)