FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples

af Paciello, Giulia, Ficarra, Elisa
Udgivet i BMC Bioinformatics (2017)

isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation

af Urgese, Gianvito, Paciello, Giulia, Acquaviva, Andrea, Ficarra, Elisa
Udgivet i BMC Bioinformatics (2016)

VDJSeq-Solver: In Silico V(D)J Recombination Detection Tool

af Paciello, Giulia, Acquaviva, Andrea, Pighi, Chiara, Ferrarini, Alberto, Macii, Enrico, Zamo’, Alberto, Ficarra, Elisa
Udgivet i PLoS One (2015)

The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

af Jacobs, Jelle, Atkins, Mardelle, Davie, Kristofer, Imrichova, Hana, Romanelli, Lucia, Christiaens, Valerie, Hulselmans, Gert, Potier, Delphine, Wouters, Jasper, Taskiran, Ibrahim Ihsan, Paciello, Giulia, González-Blas, Carmen Bravo, Koldere, Duygu, Aibar, Sara, Halder, Georg, Aerts, Stein
Udgivet i Nat Genet (2018)

Novel and Rare Fusion Transcripts Involving Transcription Factors and Tumor Suppressor Genes in Acute Myeloid Leukemia

af Padella, Antonella, Simonetti, Giorgia, Paciello, Giulia, Giotopoulos, George, Baldazzi, Carmen, Righi, Simona, Ghetti, Martina, Stengel, Anna, Guadagnuolo, Viviana, De Tommaso, Rossella, Papayannidis, Cristina, Robustelli, Valentina, Franchini, Eugenia, Ghelli Luserna di Rorà, Andrea, Ferrari, Anna, Fontana, Maria Chiara, Bruno, Samantha, Ottaviani, Emanuela, Soverini, Simona, Storlazzi, Clelia Tiziana, Haferlach, Claudia, Sabattini, Elena, Testoni, Nicoletta, Iacobucci, Ilaria, Huntly, Brian J. P., Ficarra, Elisa, Martinelli, Giovanni
Udgivet i Cancers (Basel) (2019)