Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data

Por Fortin, Jean-Philippe, Hansen, Kasper D.
Publicado no Genome Biol (2015)

Cloud-scale RNA-sequencing differential expression analysis with Myrna

Por Langmead, Ben, Hansen, Kasper D, Leek, Jeffrey T
Publicado em 2010

Promoter CpG Density Predicts Downstream Gene Loss-of-Function Intolerance

Por Boukas, Leandros, Bjornsson, Hans T., Hansen, Kasper D.
Publicado no Am J Hum Genet (2020)

Biases in Illumina transcriptome sequencing caused by random hexamer priming

Por Hansen, Kasper D., Brenner, Steven E., Dudoit, Sandrine
Publicado em 2010

Removing technical variability in RNA-seq data using conditional quantile normalization

Por Hansen, Kasper D., Irizarry, Rafael A., WU, Zhijin
Publicado em 2012

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

Por Hansen, Kasper D, Langmead, Benjamin, Irizarry, Rafael A
Publicado em 2012

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi

Por Fortin, Jean-Philippe, Triche, Timothy J., Hansen, Kasper D
Publicado no Bioinformatics (2017)

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

Por Hansen Kasper D, Purdom Elizabeth, Bullard James H, Dudoit Sandrine
Publicado em 2010-02-01

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

Por Bullard, James H, Purdom, Elizabeth, Hansen, Kasper D, Dudoit, Sandrine
Publicado em 2010

Sequencing technology does not eliminate biological variability

Por Hansen, Kasper D., Wu, Zhijin, Irizarry, Rafael A., Leek, Jeffrey T.
Publicado em 2011

Analyzing whole genome bisulfite sequencing data from highly divergent genotypes

Por Wulfridge, Phillip, Langmead, Ben, Feinberg, Andrew P, Hansen, Kasper D
Publicado no Nucleic Acids Res (2019)

Coverage recommendations for methylation analysis by whole genome bisulfite sequencing

Por Ziller, Michael J., Hansen, Kasper D., Meissner, Alexander, Aryee, Martin J.
Publicado no Nat Methods (2014)

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

Por Nellore, Abhinav, Wilks, Christopher, Hansen, Kasper D., Leek, Jeffrey T., Langmead, Ben
Publicado no Bioinformatics (2016)

Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver

Por Li, Xin, Liu, Yun, Salz, Tal, Hansen, Kasper D., Feinberg, Andrew
Publicado no Genome Res (2016)

Joint Bounding of Peaks Across Samples Improves Differential Analysis in Mass Spectrometry-Based Metabolomics

Por Myint, Leslie, Kleensang, Andre, Zhao, Liang, Hartung, Thomas, Hansen, Kasper D.
Publicado no Anal Chem (2017)

Linear models enable powerful differential activity analysis in massively parallel reporter assays

Por Myint, Leslie, Avramopoulos, Dimitrios G., Goff, Loyal A., Hansen, Kasper D.
Publicado no BMC Genomics (2019)

Differential expression analysis of RNA-seq data at single-base resolution

Por Frazee, Alyssa C., Sabunciyan, Sarven, Hansen, Kasper D., Irizarry, Rafael A., Leek, Jeffrey T.
Publicado em 2014

Corrigendum: Differential expression analysis of RNA-seq data at single-base resolution

Por Frazee, Alyssa C., Hansen, Kasper D., Leek, Jeffrey T., Sabunciyan, Sarven, Irizarry, Rafael A.
Publicado em 2014

DNA methylation is stable during replication and cell cycle arrest

Por Vandiver, Amy R., Idrizi, Adrian, Rizzardi, Lindsay, Feinberg, Andrew P., Hansen, Kasper D.
Publicado no Sci Rep (2015)

illuminaio: An open source IDAT parsing tool for Illumina microarrays

Por Smith, Mike L, Baggerly, Keith A., Bengtsson, Henrik, Ritchie, Matthew E., Hansen, Kasper D.
Publicado em 2013