Segmentum: a tool for copy number analysis of cancer genomes

Bằng Afyounian, Ebrahim, Annala, Matti, Nykter, Matti
Xuất bản năm BMC Bioinformatics (2017)

A Linear Model for Transcription Factor Binding Affinity Prediction in Protein Binding Microarrays

Bằng Annala, Matti, Laurila, Kirsti, Lähdesmäki, Harri, Nykter, Matti
Được phát hành 2011

DOT1L-HES6 fusion drives androgen independent growth in prostate cancer

Bằng Annala, Matti, Kivinummi, Kati, Leinonen, Katri, Tuominen, Joonas, Zhang, Wei, Visakorpi, Tapio, Nykter, Matti
Được phát hành 2014

Frequent mutation of the FOXA1 untranslated region in prostate cancer

Bằng Annala, Matti, Taavitsainen, Sinja, Vandekerkhove, Gillian, Bacon, Jack V. W., Beja, Kevin, Chi, Kim N., Nykter, Matti, Wyatt, Alexander W.
Xuất bản năm Commun Biol (2018)

The expression of AURKA is androgen regulated in castration-resistant prostate cancer

Bằng Kivinummi, Kati, Urbanucci, Alfonso, Leinonen, Katri, Tammela, Teuvo L. J., Annala, Matti, Isaacs, William B., Bova, G. Steven, Nykter, Matti, Visakorpi, Tapio
Xuất bản năm Sci Rep (2017)

Epigenetically altered miR-193b targets cyclin D1 in prostate cancer

Bằng Kaukoniemi, Kirsi M, Rauhala, Hanna E, Scaravilli, Mauro, Latonen, Leena, Annala, Matti, Vessella, Robert L, Nykter, Matti, Tammela, Teuvo L J, Visakorpi, Tapio
Xuất bản năm Cancer Med (2015)

Evaluation of Commercial Circulating Tumor DNA Test in Metastatic Prostate Cancer

Bằng Taavitsainen, Sinja, Annala, Matti, Ledet, Elisa, Beja, Kevin, Miller, Patrick J., Moses, Marcus, Nykter, Matti, Chi, Kim N., Sartor, Oliver, Wyatt, Alexander W.
Xuất bản năm JCO Precis Oncol (2019)

Recurrent LRP1-SNRNP25 and KCNMB4-CCND3 fusion genes promote tumor cell motility in human osteosarcoma

Bằng Yang, Jilong, Annala, Matti, Ji, Ping, Wang, Guowen, Zheng, Hong, Codgell, David, Du, Xiaoling, Fang, Zhiwei, Sun, Baocun, Nykter, Matti, Chen, Kexin, Zhang, Wei
Được phát hành 2014

Clinical association analysis of ependymomas and pilocytic astrocytomas reveals elevated FGFR3 and FGFR1 expression in aggressive ependymomas

Bằng Lehtinen, Birgitta, Raita, Annina, Kesseli, Juha, Annala, Matti, Nordfors, Kristiina, Yli-Harja, Olli, Zhang, Wei, Visakorpi, Tapio, Nykter, Matti, Haapasalo, Hannu, Granberg, Kirsi J.
Xuất bản năm BMC Cancer (2017)

Strong FGFR3 staining is a marker for FGFR3 fusions in diffuse gliomas

Bằng Granberg, Kirsi J, Annala, Matti, Lehtinen, Birgitta, Kesseli, Juha, Haapasalo, Joonas, Ruusuvuori, Pekka, Yli-Harja, Olli, Visakorpi, Tapio, Haapasalo, Hannu, Nykter, Matti, Zhang, Wei
Xuất bản năm Neuro Oncol (2017)

Whole-exome sequencing identifies germline mutation in TP53 and ATRX in a child with genomically aberrant AT/RT and her mother with anaplastic astrocytoma

Bằng Nordfors, Kristiina, Haapasalo, Joonas, Afyounian, Ebrahim, Tuominen, Joonas, Annala, Matti, Häyrynen, Sergei, Karhu, Ritva, Helén, Pauli, Lohi, Olli, Nykter, Matti, Haapasalo, Hannu, Granberg, Kirsi J.
Xuất bản năm Cold Spring Harb Mol Case Stud (2018)

Erratum: Whole-exome sequencing identifies germline mutation in TP53 and ATRX in a child with genomically aberrant AT/RT and her mother with anaplastic astrocytoma

Bằng Nordfors, Kristiina, Haapasalo, Joonas, Afyounian, Ebrahim, Tuominen, Joonas, Annala, Matti, Häyrynen, Sergei, Karhu, Ritva, Helén, Pauli, Lohi, Olli, Nykter, Matti, Haapasalo, Hannu, Granberg, Kirsi J.
Xuất bản năm Cold Spring Harb Mol Case Stud (2018)

Integrative proteomics in prostate cancer uncovers robustness against genomic and transcriptomic aberrations during disease progression

Bằng Latonen, Leena, Afyounian, Ebrahim, Jylhä, Antti, Nättinen, Janika, Aapola, Ulla, Annala, Matti, Kivinummi, Kati K., Tammela, Teuvo T. L., Beuerman, Roger W., Uusitalo, Hannu, Nykter, Matti, Visakorpi, Tapio
Xuất bản năm Nat Commun (2018)

Integrated clinical, whole-genome, and transcriptome analysis of multisampled lethal metastatic prostate cancer

Bằng Bova, G. Steven, Kallio, Heini M.L., Annala, Matti, Kivinummi, Kati, Högnäs, Gunilla, Häyrynen, Sergei, Rantapero, Tommi, Kivinen, Virpi, Isaacs, William B., Tolonen, Teemu, Nykter, Matti, Visakorpi, Tapio
Xuất bản năm Cold Spring Harb Mol Case Stud (2016)

Microseminoprotein-Beta Expression in Different Stages of Prostate Cancer

Bằng Sjöblom, Liisa, Saramäki, Outi, Annala, Matti, Leinonen, Katri, Nättinen, Janika, Tolonen, Teemu, Wahlfors, Tiina, Nykter, Matti, Bova, G. Steven, Schleutker, Johanna, Tammela, Teuvo L. J., Lilja, Hans, Visakorpi, Tapio
Xuất bản năm PLoS One (2016)

Transcriptome and Small RNA Deep Sequencing Reveals Deregulation of miRNA Biogenesis in Human Glioma

Bằng Moore, Lynette M., Kivinen, Virpi, Liu, Yuexin, Annala, Matti, Cogdell, David, Liu, Xiuping, Liu, Chang-Gong, Sawaya, Raymond, Yli-Harja, Olli, Shmulevich, Ilya, Fuller, Gregory N., Zhang, Wei, Nykter, Matti
Được phát hành 2013

Constitutively active androgen receptor splice variants AR-V3, AR-V7 and AR-V9 are co-expressed in castration-resistant prostate cancer metastases

Bằng Kallio, Heini M. L., Hieta, Reija, Latonen, Leena, Brofeldt, Anniina, Annala, Matti, Kivinummi, Kati, Tammela, Teuvo L., Nykter, Matti, Isaacs, William B., Lilja, Hans G., Bova, G. Steven, Visakorpi, Tapio
Xuất bản năm Br J Cancer (2018)

Insulin-like growth factor-binding protein 2-driven glioma progression is prevented by blocking a clinically significant integrin, integrin-linked kinase, and NF-κB network

Bằng Holmes, Kristen M., Annala, Matti, Chua, Corrine Y. X., Dunlap, Sarah M., Liu, Yuexin, Hugen, Niek, Moore, Lynette M., Cogdell, David, Hu, Limei, Nykter, Matti, Hess, Kenneth, Fuller, Gregory N., Zhang, Wei
Được phát hành 2012

IGFBP2 potentiates nuclear EGFR-STAT3 signaling

Bằng Chua, Corrine Yingxuan, Liu, Yuexin, Granberg, Kirsi J., Hu, Limei, Haapasalo, Hannu, Annala, Matti J., Cogdell, David E., Verploegen, Maartje, Moore, Lynette M., Fuller, Gregory N., Nykter, Matti, Cavenee, Webster K., Zhang, Wei
Xuất bản năm Oncogene (2015)

Evaluation of methods for modeling transcription-factor sequence specificity

Bằng Weirauch, Matthew T., Cote, Atina, Norel, Raquel, Annala, Matti, Zhao, Yue, Riley, Todd R., Saez-Rodriguez, Julio, Cokelaer, Thomas, Vedenko, Anastasia, Talukder, Shaheynoor, Bussemaker, Harmen J., Morris, Quaid D., Bulyk, Martha L., Stolovitzky, Gustavo, Hughes, Timothy R.
Được phát hành 2013