BzpF is a CREB-like transcription factor that regulates spore maturation and stability in Dictyostelium

Por Huang, Eryong, Talukder, Shaheynoor, Hughes, Timothy R., Curk, Tomaz, Zupan, Blaz, Shaulsky, Gad, Katoh-Kurasawa, Mariko
Publicado em 2011

Predicting the binding preference of transcription factors to individual DNA k-mers

Por Alleyne, Trevis M., Peña-Castillo, Lourdes, Badis, Gwenael, Talukder, Shaheynoor, Berger, Michael F., Gehrke, Andrew R., Philippakis, Anthony A., Bulyk, Martha L., Morris, Quaid D., Hughes, Timothy R.
Publicado em 2009

Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences

Por Santos, Miguel A., Turinsky, Andrei L., Ong, Serene, Tsai, Jennifer, Berger, Michael F., Badis, Gwenael, Talukder, Shaheynoor, Gehrke, Andrew R., Bulyk, Martha L., Hughes, Timothy R., Wodak, Shoshana J.
Publicado em 2010

Evaluation of methods for modeling transcription-factor sequence specificity

Por Weirauch, Matthew T., Cote, Atina, Norel, Raquel, Annala, Matti, Zhao, Yue, Riley, Todd R., Saez-Rodriguez, Julio, Cokelaer, Thomas, Vedenko, Anastasia, Talukder, Shaheynoor, Bussemaker, Harmen J., Morris, Quaid D., Bulyk, Martha L., Stolovitzky, Gustavo, Hughes, Timothy R.
Publicado em 2013

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

Por Jolma, Arttu, Kivioja, Teemu, Toivonen, Jarkko, Cheng, Lu, Wei, Gonghong, Enge, Martin, Taipale, Mikko, Vaquerizas, Juan M., Yan, Jian, Sillanpää, Mikko J., Bonke, Martin, Palin, Kimmo, Talukder, Shaheynoor, Hughes, Timothy R., Luscombe, Nicholas M., Ukkonen, Esko, Taipale, Jussi
Publicado em 2010

Variation in homeodomain DNA-binding revealed by high-resolution analysis of sequence preferences

Por Berger, Michael F., Badis, Gwenael, Gehrke, Andrew R., Talukder, Shaheynoor, Philippakis, Anthony A., Peña-Castillo, Lourdes, Alleyne, Trevis M., Mnaimneh, Sanie, Botvinnik, Olga B., Chan, Esther T., Khalid, Faiqua, Zhang, Wen, Newburger, Daniel, Jaeger, Savina, Morris, Quaid D., Bulyk, Martha L., Hughes, Timothy R.
Publicado em 2008

Diversity and Complexity in DNA Recognition by Transcription Factors

Por Badis, Gwenael, Berger, Michael F., Philippakis, Anthony A., Talukder, Shaheynoor, Gehrke, Andrew R., Jaeger, Savina A., Chan, Esther T., Metzler, Genita, Vedenko, Anastasia, Chen, Xiaoyu, Kuznetsov, Hanna, Wang, Chi-Fong, Coburn, David, Newburger, Daniel E., Morris, Quaid, Hughes, Timothy R., Bulyk, Martha L.
Publicado em 2009

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

Por Wei, Gong-Hong, Badis, Gwenael, Berger, Michael F, Kivioja, Teemu, Palin, Kimmo, Enge, Martin, Bonke, Martin, Jolma, Arttu, Varjosalo, Markku, Gehrke, Andrew R, Yan, Jian, Talukder, Shaheynoor, Turunen, Mikko, Taipale, Mikko, Stunnenberg, Hendrik G, Ukkonen, Esko, Hughes, Timothy R, Bulyk, Martha L, Taipale, Jussi
Publicado em 2010

A new library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters

Por Badis, Gwenael, Chan, Esther T., van Bakel, Harm, Pena-Castillo, Lourdes, Tillo, Desiree, Tsui, Kyle, Carlson, Clayton D., Gossett, Andrea J., Hasinoff, Michael J., Warren, Christopher L., Gebbia, Marinella, Talukder, Shaheynoor, Yang, Ally, Mnaimneh, Sanie, Terterov, Dimitri, Coburn, David, Yeo, Ai Li, Yeo, Zhen Xuan, Clarke, Neil D., Lieb, Jason D., Ansari, Aseem Z., Nislow, Corey, Hughes, Timothy R.
Publicado em 2008