Cyrface: An interface from Cytoscape to R that provides a user interface to R packages

Por Gonçalves, Emanuel, Mirlach, Franz, Saez-Rodriguez, Julio
Publicado em 2014

Structural and functional analysis of cellular networks with CellNetAnalyzer

Por Klamt, Steffen, Saez-Rodriguez, Julio, Gilles, Ernst D
Publicado em 2007

CySBGN: A Cytoscape plug-in to integrate SBGN maps

Por Gonçalves, Emanuel, Iersel, Martijn van, Saez-Rodriguez, Julio
Publicado em 2013

Network based elucidation of drug response: from modulators to targets

Por Iorio, Francesco, Saez-Rodriguez, Julio, Bernardo, Diego di
Publicado em 2013

Looking beyond the cancer cell for effective drug combinations

Por Dry, Jonathan R., Yang, Mi, Saez-Rodriguez, Julio
Publicado no Genome Med (2016)

caspo: a toolbox for automated reasoning on the response of logical signaling networks families

Por Videla, Santiago, Saez-Rodriguez, Julio, Guziolowski, Carito, Siegel, Anne
Publicado no Bioinformatics (2017)

Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach

Por Henriques, David, Rocha, Miguel, Saez-Rodriguez, Julio, Banga, Julio R.
Publicado no Bioinformatics (2015)

Transcriptional data: a new gateway to drug repositioning?

Por Iorio, Francesco, Rittman, Timothy, Ge, Hong, Menden, Michael, Saez-Rodriguez, Julio
Publicado em 2013

Logic-Based Models for the Analysis of Cell Signaling Networks

Por Morris, Melody K., Saez-Rodriguez, Julio, Sorger, Peter K., Lauffenburger, Douglas A.
Publicado em 2010

A methodology for the structural and functional analysis of signaling and regulatory networks

Por Simeoni Luca, Lindquist Jonathan A, Saez-Rodriguez Julio, Klamt Steffen, Gilles Ernst D
Publicado em 2006-02-01

A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks

Por Conzelmann, Holger, Saez-Rodriguez, Julio, Sauter, Thomas, Kholodenko, Boris N, Gilles, Ernst D
Publicado em 2006

A methodology for the structural and functional analysis of signaling and regulatory networks

Por Klamt, Steffen, Saez-Rodriguez, Julio, Lindquist, Jonathan A, Simeoni, Luca, Gilles, Ernst D
Publicado em 2006

The Logic of EGFR/ErbB Signaling: Theoretical Properties and Analysis of High-Throughput Data

Por Samaga, Regina, Saez-Rodriguez, Julio, Alexopoulos, Leonidas G., Sorger, Peter K., Klamt, Steffen
Publicado em 2009

BioServices: a common Python package to access biological Web Services programmatically

Por Cokelaer, Thomas, Pultz, Dennis, Harder, Lea M., Serra-Musach, Jordi, Saez-Rodriguez, Julio
Publicado em 2013

Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies

Por Thiele, Sven, Cerone, Luca, Saez-Rodriguez, Julio, Siegel, Anne, Guziołowski, Carito, Klamt, Steffen
Publicado no BMC Bioinformatics (2015)

Data-driven reverse engineering of signaling pathways using ensembles of dynamic models

Por Henriques, David, Villaverde, Alejandro F., Rocha, Miguel, Saez-Rodriguez, Julio, Banga, Julio R.
Publicado no PLoS Comput Biol (2017)

Visual setup of logical models of signaling and regulatory networks with ProMoT

Por Saez-Rodriguez, Julio, Mirschel, Sebastian, Hemenway, Rebecca, Klamt, Steffen, Gilles, Ernst Dieter, Ginkel, Martin
Publicado em 2006

Crowdsourcing Network Inference: The DREAM Predictive Signaling Network Challenge

Por Prill, Robert J., Saez-Rodriguez, Julio, Alexopoulos, Leonidas G., Sorger, Peter K., Stolovitzky, Gustavo
Publicado em 2011

Integrating literature-constrained and data-driven inference of signalling networks

Por Eduati, Federica, De Las Rivas, Javier, Di Camillo, Barbara, Toffolo, Gianna, Saez-Rodriguez, Julio
Publicado em 2012

Empirical inference of circuitry and plasticity in a kinase signaling network

Por Wilkes, Edmund H., Terfve, Camille, Gribben, John G., Saez-Rodriguez, Julio, Cutillas, Pedro Rodriguez
Publicado no Proc Natl Acad Sci U S A (2015)