Segmentum: a tool for copy number analysis of cancer genomes

by Afyounian, Ebrahim, Annala, Matti, Nykter, Matti
Published in BMC Bioinformatics (2017)

Proteomics of prostate cancer – revealing how cancer cells master their messy genomes

by Latonen, Leena, Nykter, Matti, Visakorpi, Tapio
Published in Oncoscience (2018)

Balance between Noise and Information Flow Maximizes Set Complexity of Network Dynamics

by Mäki-Marttunen, Tuomo, Kesseli, Juha, Nykter, Matti
Published 2013

Modes of immunosuppression in glioblastoma microenvironment

by Lehtipuro, Suvi, Nykter, Matti, Granberg, Kirsi J.
Published in Oncotarget (2019)

A Linear Model for Transcription Factor Binding Affinity Prediction in Protein Binding Microarrays

by Annala, Matti, Laurila, Kirsti, Lähdesmäki, Harri, Nykter, Matti
Published 2011

Leukemia Prediction Using Sparse Logistic Regression

by Manninen, Tapio, Huttunen, Heikki, Ruusuvuori, Pekka, Nykter, Matti
Published 2013

Cancer Genome Sequencing: Understanding Malignancy as a Disease of the Genome, its Conformation, and its Evolution

by Patel, Lalit R., Nykter, Matti, Chen, Kexin, Zhang, Wei
Published 2012

Characterization of aberrant pathways across human cancers

by Ylipää, Antti, Yli-Harja, Olli, Zhang, Wei, Nykter, Matti
Published 2013

A systems biological approach to identify key transcription factors and their genomic neighborhoods in human sarcomas

by Ylipää, Antti, Yli-Harja, Olli, Zhang, Wei, Nykter, Matti
Published 2011

Cancer systems biology: signal processing for cancer research

by Yli-Harja, Olli, Ylipää, Antti, Nykter, Matti, Zhang, Wei
Published 2011

A data integration framework for prediction of transcription factor targets: a BCL6 case study

by Nykter, Matti, Lähdesmäki, Harri, Rust, Alistair, Thorsson, Vesteinn, Shmulevich, Ilya
Published 2009

Feature-based analysis of mouse prostatic intraepithelial neoplasia in histological tissue sections

by Ruusuvuori, Pekka, Valkonen, Mira, Nykter, Matti, Visakorpi, Tapio, Latonen, Leena
Published in J Pathol Inform (2016)

Analysis of spatial heterogeneity in normal epithelium and preneoplastic alterations in mouse prostate tumor models

by Valkonen, Mira, Ruusuvuori, Pekka, Kartasalo, Kimmo, Nykter, Matti, Visakorpi, Tapio, Latonen, Leena
Published in Sci Rep (2017)

Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples

by Lin, Jake, Kramna, Lenka, Autio, Reija, Hyöty, Heikki, Nykter, Matti, Cinek, Ondrej
Published in BMC Genomics (2017)

Comparative analysis of tissue reconstruction algorithms for 3D histology

by Kartasalo, Kimmo, Latonen, Leena, Vihinen, Jorma, Visakorpi, Tapio, Nykter, Matti, Ruusuvuori, Pekka
Published in Bioinformatics (2018)

Simulation of microarray data with realistic characteristics

by Nykter, Matti, Aho, Tommi, Ahdesmäki, Miika, Ruusuvuori, Pekka, Lehmussola, Antti, Yli-Harja, Olli
Published 2006

Biological Information as Set-Based Complexity

by Galas, David J., Nykter, Matti, Carter, Gregory W., Price, Nathan D., Shmulevich, Ilya
Published in IEEE Trans Inf Theory (2010)

Interleukin 10 mutant zebrafish have an enhanced interferon gamma response and improved survival against a Mycobacterium marinum infection

by Harjula, Sanna-Kaisa E., Ojanen, Markus J. T., Taavitsainen, Sinja, Nykter, Matti, Rämet, Mika
Published in Sci Rep (2018)

DOT1L-HES6 fusion drives androgen independent growth in prostate cancer

by Annala, Matti, Kivinummi, Kati, Leinonen, Katri, Tuominen, Joonas, Zhang, Wei, Visakorpi, Tapio, Nykter, Matti
Published 2014

TMIC-30. COMPUTATIONAL CHARACTERIZATION OF SUPPRESSIVE IMMUNE MICROENVIRONMENTS IN GLIOBLASTOMA

by Luoto, Suvi, Hermelo, Ismaïl, Vuorinen, Elisa, Hannus, Paavo, Kesseli, Juha, Nykter, Matti, Granberg, Kirsi
Published in Neuro Oncol (2018)