PPI layouts: BioJS components for the display of Protein-Protein Interactions

по Salazar, Gustavo A., Meintjes, Ayton, Mulder, Nicola
Опубликовано 2014

DAS Writeback: A Collaborative Annotation System

по Salazar, Gustavo A, Jimenez, Rafael C, Garcia, Alexander, Hermjakob, Henning, Mulder, Nicola, Blake, Edwin
Опубликовано 2011

myKaryoView: A Light-Weight Client for Visualization of Genomic Data

по Jimenez, Rafael C., Salazar, Gustavo A., Gel, Bernat, Dopazo, Joaquin, Mulder, Nicola, Corpas, Manuel
Опубликовано 2011

A web-based protein interaction network visualizer

по Salazar, Gustavo A, Meintjes, Ayton, Mazandu, Gaston K, Rapanoël, Holifidy A, Akinola, Richard O, Mulder, Nicola J
Опубликовано 2014

Dasty3, a WEB framework for DAS

по Villaveces, Jose M., Jimenez, Rafael C., Garcia, Leyla J., Salazar, Gustavo A., Gel, Bernat, Mulder, Nicola, Martin, Maria, Garcia, Alexander, Hermjakob, Henning
Опубликовано 2011

Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes

по Richardson, Lorna J, Rawlings, Neil D, Salazar, Gustavo A, Almeida, Alexandre, Haft, David R, Ducq, Gregory, Sutton, Granger G, Finn, Robert D
Опубликовано в: Nucleic Acids Res (2019)

MyDas, an Extensible Java DAS Server

по Salazar, Gustavo A., García, Leyla J., Jones, Philip, Jimenez, Rafael C., Quinn, Antony F., Jenkinson, Andrew M., Mulder, Nicola, Martin, Maria, Hunter, Sarah, Hermjakob, Henning
Опубликовано 2012

Platelet proteome reveals novel pathways of platelet activation and platelet-mediated immunoregulation in dengue

по Trugilho, Monique Ramos de Oliveira, Hottz, Eugenio Damaceno, Brunoro, Giselle Villa Flor, Teixeira-Ferreira, André, Carvalho, Paulo Costa, Salazar, Gustavo Adolfo, Zimmerman, Guy A., Bozza, Fernando A., Bozza, Patrícia T., Perales, Jonas
Опубликовано в: PLoS Pathog (2017)

Pfam: The protein families database in 2021

по Mistry, Jaina, Chuguransky, Sara, Williams, Lowri, Qureshi, Matloob, Salazar, Gustavo A, Sonnhammer, Erik L L, Tosatto, Silvio C E, Paladin, Lisanna, Raj, Shriya, Richardson, Lorna J, Finn, Robert D, Bateman, Alex
Опубликовано в: Nucleic Acids Res (2020)

The Pfam protein families database: towards a more sustainable future

по Finn, Robert D., Coggill, Penelope, Eberhardt, Ruth Y., Eddy, Sean R., Mistry, Jaina, Mitchell, Alex L., Potter, Simon C., Punta, Marco, Qureshi, Matloob, Sangrador-Vegas, Amaia, Salazar, Gustavo A., Tate, John, Bateman, Alex
Опубликовано в: Nucleic Acids Res (2016)

BioJS: an open source JavaScript framework for biological data visualization

по Gómez, John, García, Leyla J., Salazar, Gustavo A., Villaveces, Jose, Gore, Swanand, García, Alexander, Martín, Maria J., Launay, Guillaume, Alcántara, Rafael, del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Velankar, Sameer, Hermjakob, Henning, Zong, Chenggong, Ping, Peipei, Corpas, Manuel, Jiménez, Rafael C.
Опубликовано 2013

EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies

по Mitchell, Alex L, Scheremetjew, Maxim, Denise, Hubert, Potter, Simon, Tarkowska, Aleksandra, Qureshi, Matloob, Salazar, Gustavo A, Pesseat, Sebastien, Boland, Miguel A, Hunter, Fiona M I, ten Hoopen, Petra, Alako, Blaise, Amid, Clara, Wilkinson, Darren J, Curtis, Thomas P, Cochrane, Guy, Finn, Robert D
Опубликовано в: Nucleic Acids Res (2018)

The Pfam protein families database in 2019

по El-Gebali, Sara, Mistry, Jaina, Bateman, Alex, Eddy, Sean R, Luciani, Aurélien, Potter, Simon C, Qureshi, Matloob, Richardson, Lorna J, Salazar, Gustavo A, Smart, Alfredo, Sonnhammer, Erik L L, Hirsh, Layla, Paladin, Lisanna, Piovesan, Damiano, Tosatto, Silvio C E, Finn, Robert D
Опубликовано в: Nucleic Acids Res (2019)

BioJS: an open source standard for biological visualisation – its status in 2014

по Corpas, Manuel, Jimenez, Rafael, Carbon, Seth J, García, Alex, Garcia, Leyla, Goldberg, Tatyana, Gomez, John, Kalderimis, Alexis, Lewis, Suzanna E, Mulvany, Ian, Pawlik, Aleksandra, Rowland, Francis, Salazar, Gustavo, Schreiber, Fabian, Sillitoe, Ian, Spooner, William H, Thanki, Anil S., Villaveces, José M, Yachdav, Guy, Hermjakob, Henning
Опубликовано 2014

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation

по Sillitoe, Ian, Andreeva, Antonina, Blundell, Tom L, Buchan, Daniel W A, Finn, Robert D, Gough, Julian, Jones, David, Kelley, Lawrence A, Paysan-Lafosse, Typhaine, Lam, Su Datt, Murzin, Alexey G, Pandurangan, Arun Prasad, Salazar, Gustavo A, Skwark, Marcin J, Sternberg, Michael J E, Velankar, Sameer, Orengo, Christine
Опубликовано в: Nucleic Acids Res (2020)

The InterPro protein families and domains database: 20 years on

по Blum, Matthias, Chang, Hsin-Yu, Chuguransky, Sara, Grego, Tiago, Kandasaamy, Swaathi, Mitchell, Alex, Nuka, Gift, Paysan-Lafosse, Typhaine, Qureshi, Matloob, Raj, Shriya, Richardson, Lorna, Salazar, Gustavo A, Williams, Lowri, Bork, Peer, Bridge, Alan, Gough, Julian, Haft, Daniel H, Letunic, Ivica, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Necci, Marco, Orengo, Christine A, Pandurangan, Arun P, Rivoire, Catherine, Sigrist, Christian J A, Sillitoe, Ian, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Wu, Cathy H, Bateman, Alex, Finn, Robert D
Опубликовано в: Nucleic Acids Res (2020)

iAnn: an event sharing platform for the life sciences

по Jimenez, Rafael C., Albar, Juan P., Bhak, Jong, Blatter, Marie-Claude, Blicher, Thomas, Brazas, Michelle D., Brooksbank, Cath, Budd, Aidan, De Las Rivas, Javier, Dreyer, Jacqueline, van Driel, Marc A., Dunn, Michael J., Fernandes, Pedro L., van Gelder, Celia W. G., Hermjakob, Henning, Ioannidis, Vassilios, Judge, David P., Kahlem, Pascal, Korpelainen, Eija, Kraus, Hans-Joachim, Loveland, Jane, Mayer, Christine, McDowall, Jennifer, Moran, Federico, Mulder, Nicola, Nyronen, Tommi, Rother, Kristian, Salazar, Gustavo A., Schneider, Reinhard, Via, Allegra, Villaveces, Jose M., Yu, Ping, Schneider, Maria V., Attwood, Teresa K., Corpas, Manuel
Опубликовано 2013

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

по Mitchell, Alex L, Attwood, Teresa K, Babbitt, Patricia C, Blum, Matthias, Bork, Peer, Bridge, Alan, Brown, Shoshana D, Chang, Hsin-Yu, El-Gebali, Sara, Fraser, Matthew I, Gough, Julian, Haft, David R, Huang, Hongzhan, Letunic, Ivica, Lopez, Rodrigo, Luciani, Aurélien, Madeira, Fabio, Marchler-Bauer, Aron, Mi, Huaiyu, Natale, Darren A, Necci, Marco, Nuka, Gift, Orengo, Christine, Pandurangan, Arun P, Paysan-Lafosse, Typhaine, Pesseat, Sebastien, Potter, Simon C, Qureshi, Matloob A, Rawlings, Neil D, Redaschi, Nicole, Richardson, Lorna J, Rivoire, Catherine, Salazar, Gustavo A, Sangrador-Vegas, Amaia, Sigrist, Christian J A, Sillitoe, Ian, Sutton, Granger G, Thanki, Narmada, Thomas, Paul D, Tosatto, Silvio C E, Yong, Siew-Yit, Finn, Robert D
Опубликовано в: Nucleic Acids Res (2019)