Application of MM/PBSA colony free energy to loop decoy discrimination: Toward correlation between energy and root mean square deviation

by Fogolari, Federico, Tosatto, Silvio C.E.
Published 2005

INGA 2.0: improving protein function prediction for the dark proteome

by Piovesan, Damiano, Tosatto, Silvio C E
Published in Nucleic Acids Res (2019)

The RING 2.0 web server for high quality residue interaction networks

by Piovesan, Damiano, Minervini, Giovanni, Tosatto, Silvio C.E.
Published in Nucleic Acids Res (2016)

Large‐scale analysis of intrinsic disorder flavors and associated functions in the protein sequence universe

by Necci, Marco, Piovesan, Damiano, Tosatto, Silvio C. E.
Published in Protein Sci (2016)

Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins

by Necci, Marco, Piovesan, Damiano, Tosatto, Silvio C E
Published in Database (Oxford) (2018)

SODA: prediction of protein solubility from disorder and aggregation propensity

by Paladin, Lisanna, Piovesan, Damiano, Tosatto, Silvio C. E.
Published in Nucleic Acids Res (2017)

The pVHL neglected functions, a tale of hypoxia-dependent and -independent regulations in cancer

by Minervini, Giovanni, Pennuto, Maria, Tosatto, Silvio C. E.
Published in Open Biol (2020)

Critical assessment of protein intrinsic disorder prediction

by Necci, Marco, Piovesan, Damiano, Tosatto, Silvio C. E.
Published in Nat Methods (2021)

Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines

by Vullo, Alessandro, Bortolami, Oscar, Pollastri, Gianluca, Tosatto, Silvio C. E.
Published 2006

PASTA 2.0: an improved server for protein aggregation prediction

by Walsh, Ian, Seno, Flavio, Tosatto, Silvio C.E., Trovato, Antonio
Published 2014

Dynamic scaffolds for neuronal signaling: in silico analysis of the TANC protein family

by Gasparini, Alessandra, Tosatto, Silvio C. E., Murgia, Alessandra, Leonardi, Emanuela
Published in Sci Rep (2017)

RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins

by Hirsh, Layla, Paladin, Lisanna, Piovesan, Damiano, Tosatto, Silvio C E
Published in Nucleic Acids Res (2018)

Genotype-phenotype relations of the von Hippel-Lindau tumor suppressor inferred from a large-scale analysis of disease mutations and interactors

by Minervini, Giovanni, Quaglia, Federica, Tabaro, Francesco, Tosatto, Silvio C. E.
Published in PLoS Comput Biol (2019)

APICURON: a database to credit and acknowledge the work of biocurators

by Hatos, András, Quaglia, Federica, Piovesan, Damiano, Tosatto, Silvio C E
Published in Database (Oxford) (2021)

MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins

by Potenza, Emilio, Domenico, Tomás Di, Walsh, Ian, Tosatto, Silvio C.E.
Published in Nucleic Acids Res (2014)

REPETITA: detection and discrimination of the periodicity of protein solenoid repeats by discrete Fourier transform

by Marsella, Luca, Sirocco, Francesco, Trovato, Antonio, Seno, Flavio, Tosatto, Silvio C.E.
Published 2009

INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity

by Piovesan, Damiano, Giollo, Manuel, Leonardi, Emanuela, Ferrari, Carlo, Tosatto, Silvio C.E.
Published in Nucleic Acids Res (2015)

“Protein” no longer means what it used to

by Parisi, Gustavo, Palopoli, Nicolas, Tosatto, Silvio C.E., Fornasari, María Silvina, Tompa, Peter
Published in Curr Res Struct Biol (2021)

A Computational Model of the LGI1 Protein Suggests a Common Binding Site for ADAM Proteins

by Leonardi, Emanuela, Andreazza, Simonetta, Vanin, Stefano, Busolin, Giorgia, Nobile, Carlo, Tosatto, Silvio C. E.
Published 2011

Design and Analysis of a Petri Net Model of the Von Hippel-Lindau (VHL) Tumor Suppressor Interaction Network

by Minervini, Giovanni, Panizzoni, Elisabetta, Giollo, Manuel, Masiero, Alessandro, Ferrari, Carlo, Tosatto, Silvio C. E.
Published 2014