A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

Por Eddy Sean R
Publicado em 2002-07-01

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

Por Eddy, Sean R
Publicado em 2002

A Model of the Statistical Power of Comparative Genome Sequence Analysis

Por Eddy, Sean R
Publicado em 2005

“Antedisciplinary” Science

Por Eddy, Sean R
Publicado em 2005

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

Por Eddy, Sean R.
Publicado em 2008

Open Revolution

Por Eddy, Sean R
Publicado em 2009

Accelerated Profile HMM Searches

Por Eddy, Sean R.
Publicado em 2011

Homology searches for structural RNAs: from proof of principle to practical use

Por Eddy, Sean R.
Publicado no RNA (2015)

Computational analysis of conserved RNA secondary structure in transcriptomes and genomes

Por Eddy, Sean R.
Publicado no Annu Rev Biophys (2014)

Noncoding RNA gene detection using comparative sequence analysis

Por Rivas, Elena, Eddy, Sean R
Publicado em 2001

Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes

Por Bao, Zhirong, Eddy, Sean R.
Publicado em 2002

Probabilistic Phylogenetic Inference with Insertions and Deletions

Por Rivas, Elena, Eddy, Sean R.
Publicado em 2008

Parameterizing sequence alignment with an explicit evolutionary model

Por Rivas, Elena, Eddy, Sean R.
Publicado no BMC Bioinformatics (2015)

RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs

Por Zmasek, Christian M, Eddy, Sean R
Publicado em 2002

RSEARCH: Finding homologs of single structured RNA sequences

Por Klein, Robert J, Eddy, Sean R
Publicado em 2003

Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction

Por Dowell, Robin D, Eddy, Sean R
Publicado em 2004

Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints

Por Dowell, Robin D, Eddy, Sean R
Publicado em 2006

Query-Dependent Banding (QDB) for Faster RNA Similarity Searches

Por Nawrocki, Eric P, Eddy, Sean R
Publicado em 2007

Local RNA structure alignment with incomplete sequence

Por Kolbe, Diana L., Eddy, Sean R.
Publicado em 2009

A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas

Por Davis, Fred P., Eddy, Sean R.
Publicado em 2009