A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

nork Eddy Sean R
Argitaratua 2002-07-01

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

nork Eddy, Sean R
Argitaratua 2002

A Model of the Statistical Power of Comparative Genome Sequence Analysis

nork Eddy, Sean R
Argitaratua 2005

“Antedisciplinary” Science

nork Eddy, Sean R
Argitaratua 2005

A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation

nork Eddy, Sean R.
Argitaratua 2008

Open Revolution

nork Eddy, Sean R
Argitaratua 2009

Accelerated Profile HMM Searches

nork Eddy, Sean R.
Argitaratua 2011

Homology searches for structural RNAs: from proof of principle to practical use

nork Eddy, Sean R.
Argitaratua izan da RNA (2015)

Computational analysis of conserved RNA secondary structure in transcriptomes and genomes

nork Eddy, Sean R.
Argitaratua izan da Annu Rev Biophys (2014)

Noncoding RNA gene detection using comparative sequence analysis

nork Rivas, Elena, Eddy, Sean R
Argitaratua 2001

Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes

nork Bao, Zhirong, Eddy, Sean R.
Argitaratua 2002

Probabilistic Phylogenetic Inference with Insertions and Deletions

nork Rivas, Elena, Eddy, Sean R.
Argitaratua 2008

Parameterizing sequence alignment with an explicit evolutionary model

nork Rivas, Elena, Eddy, Sean R.
Argitaratua izan da BMC Bioinformatics (2015)

RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs

nork Zmasek, Christian M, Eddy, Sean R
Argitaratua 2002

RSEARCH: Finding homologs of single structured RNA sequences

nork Klein, Robert J, Eddy, Sean R
Argitaratua 2003

Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction

nork Dowell, Robin D, Eddy, Sean R
Argitaratua 2004

Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints

nork Dowell, Robin D, Eddy, Sean R
Argitaratua 2006

Query-Dependent Banding (QDB) for Faster RNA Similarity Searches

nork Nawrocki, Eric P, Eddy, Sean R
Argitaratua 2007

Local RNA structure alignment with incomplete sequence

nork Kolbe, Diana L., Eddy, Sean R.
Argitaratua 2009

A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas

nork Davis, Fred P., Eddy, Sean R.
Argitaratua 2009