The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function

Autor Punta, Marco, Ofran, Yanay
Vydáno 2008

Correction: The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function

Autor Punta, Marco, Ofran, Yanay
Vydáno 2008

Movement of the C-helix during the gating of cyclic nucleotide-gated channels.

Autor Mazzolini, Monica, Punta, Marco, Torre, Vincent
Vydáno 2002

Structural genomics plucks high-hanging membrane proteins

Autor Kloppmann, Edda, Punta, Marco, Rost, Burkhard
Vydáno 2012

Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation

Autor Russo, Elena Tea, Laio, Alessandro, Punta, Marco
Vydáno v BMC Bioinformatics (2021)

An estimated 5% of new protein structures solved today represent a new Pfam family

Autor Mistry, Jaina, Kloppmann, Edda, Rost, Burkhard, Punta, Marco
Vydáno 2013

The SHOCT Domain: A Widespread Domain Under-Represented in Model Organisms

Autor Eberhardt, Ruth Y., Bartholdson, S. Josefin, Punta, Marco, Bateman, Alex
Vydáno 2013

Improved Disorder Prediction by Combination of Orthogonal Approaches

Autor Schlessinger, Avner, Punta, Marco, Yachdav, Guy, Kajan, Laszlo, Rost, Burkhard
Vydáno 2009

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence

Autor Lippi, Marco, Passerini, Andrea, Punta, Marco, Rost, Burkhard, Frasconi, Paolo
Vydáno 2008

The Immunogenic Potential of Recurrent Cancer Drug Resistance Mutations: An In Silico Study

Autor Punta, Marco, Jennings, Victoria A., Melcher, Alan A., Lise, Stefano
Vydáno v Front Immunol (2020)

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

Autor Mistry, Jaina, Finn, Robert D., Eddy, Sean R., Bateman, Alex, Punta, Marco
Vydáno 2013

Membrane Protein Prediction Methods

Autor Punta, Marco, Forrest, Lucy R., Bigelow, Henry, Kernytsky, Andrew, Liu, Jinfeng, Rost, Burkhard
Vydáno 2007

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surf...

Autor Natarajan, Padmaja, Punta, Marco, Kumar, Abhinav, Yeh, Andrew P, Godzik, Adam, Aravind, L
Vydáno v BMC Bioinformatics (2015)

AntiFam: a tool to help identify spurious ORFs in protein annotation

Autor Eberhardt, Ruth Y., Haft, Daniel H., Punta, Marco, Martin, Maria, O'Donovan, Claire, Bateman, Alex
Vydáno 2012

Structural genomics target selection for the New York consortium on membrane protein structure

Autor Punta, Marco, Love, James, Handelman, Samuel, Hunt, John F., Shapiro, Lawrence, Hendrickson, Wayne A., Rost, Burkhard
Vydáno 2009

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam

Autor Chiang, Zachary, Vastermark, Ake, Punta, Marco, Coggill, Penelope C., Mistry, Jaina, Finn, Robert D., Saier, Milton H.
Vydáno v Brief Bioinform (2015)

The challenge of increasing Pfam coverage of the human proteome

Autor Mistry, Jaina, Coggill, Penny, Eberhardt, Ruth Y., Deiana, Antonio, Giansanti, Andrea, Finn, Robert D., Bateman, Alex, Punta, Marco
Vydáno 2013

The challenge of increasing Pfam coverage of the human proteome

Autor Mistry, Jaina, Coggill, Penny, Eberhardt, Ruth Y., Deiana, Antonio, Giansanti, Andrea, Finn, Robert D., Bateman, Alex, Punta, Marco
Vydáno 2013

New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily

Autor Trame, Christine B, Chang, Yuanyuan, Axelrod, Herbert L, Eberhardt, Ruth Y, Coggill, Penelope, Punta, Marco, Rawlings, Neil D
Vydáno 2014

Solution NMR structures of proteins VPA0419 from Vibrio parahaemolyticus and yiiS from Shigella flexneri provide structural coverage for protein domain family PFAM 04175

Autor Singarapu, Kiran Kumar, Mills, Jeffrey L, Xiao, Rong, Acton, Thomas, Punta, Marco, Fischer, Markus, Honig, Barry, Rost, Burkhard, Montelione, Gaetano T, Szyperski, Thomas
Vydáno 2010