Making the most of RNA-seq: Pre-processing sequencing data with Opossum for reliable SNP variant detection

od Oikkonen, Laura, Lise, Stefano
Izdano u Wellcome Open Res (2017)

Docking protein domains in contact space

od Lise, Stefano, Walker-Taylor, Alice, Jones, David T
Izdano 2006

Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods

od Lise, Stefano, Archambeau, Cedric, Pontil, Massimiliano, Jones, David T
Izdano 2009

Predictions of Hot Spot Residues at Protein-Protein Interfaces Using Support Vector Machines

od Lise, Stefano, Buchan, Daniel, Pontil, Massimiliano, Jones, David T.
Izdano 2011

PepSite: prediction of peptide-binding sites from protein surfaces

od Trabuco, Leonardo G., Lise, Stefano, Petsalaki, Evangelia, Russell, Robert B.
Izdano 2012

The Immunogenic Potential of Recurrent Cancer Drug Resistance Mutations: An In Silico Study

od Punta, Marco, Jennings, Victoria A., Melcher, Alan A., Lise, Stefano
Izdano u Front Immunol (2020)

Autosomal dominant osteopetrosis associated with renal tubular acidosis is due to a CLCN7 mutation

od Piret, Sian E., Gorvin, Caroline M., Trinh, Anne, Taylor, John, Lise, Stefano, Taylor, Jenny C., Ebeling, Peter R., Thakker, Rajesh V.
Izdano u Am J Med Genet A (2016)

Identification of single nucleotide variants using position-specific error estimation in deep sequencing data

od Kleftogiannis, Dimitrios, Punta, Marco, Jayaram, Anuradha, Sandhu, Shahneen, Wong, Stephen Q., Gasi Tandefelt, Delila, Conteduca, Vincenza, Wetterskog, Daniel, Attard, Gerhardt, Lise, Stefano
Izdano u BMC Med Genomics (2019)

Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity

od Heindl, Andreas, Khan, Adnan Mujahid, Rodrigues, Daniel Nava, Eason, Katherine, Sadanandam, Anguraj, Orbegoso, Cecilia, Punta, Marco, Sottoriva, Andrea, Lise, Stefano, Banerjee, Susana, Yuan, Yinyin
Izdano u Nat Commun (2018)

Clinical BRCA1/2 reversion analysis identifies hotspot mutations and predicted neoantigens associated with therapy resistance

od Pettitt, Stephen J., Frankum, Jessica R., Punta, Marco, Lise, Stefano, Alexander, John, Chen, Yi, Yap, Timothy A., Haider, Syed, Tutt, Andrew N. J., Lord, Christopher J.
Izdano u Cancer Discov (2020)

Extreme intratumour heterogeneity and driver evolution in mismatch repair deficient gastro-oesophageal cancer

od von Loga, Katharina, Woolston, Andrew, Punta, Marco, Barber, Louise J., Griffiths, Beatrice, Semiannikova, Maria, Spain, Georgia, Challoner, Benjamin, Fenwick, Kerry, Simon, Ronald, Marx, Andreas, Sauter, Guido, Lise, Stefano, Matthews, Nik, Gerlinger, Marco
Izdano u Nat Commun (2020)

Author Correction: Extreme intratumour heterogeneity and driver evolution in mismatch repair deficient gastro-oesophageal cancer

od von Loga, Katharina, Woolston, Andrew, Punta, Marco, Barber, Louise J., Griffiths, Beatrice, Semiannikova, Maria, Spain, Georgia, Challoner, Benjamin, Fenwick, Kerry, Simon, Ronald, Marx, Andreas, Sauter, Guido, Lise, Stefano, Matthews, Nik, Gerlinger, Marco
Izdano u Nat Commun (2020)

Next-generation sequencing (NGS) as a diagnostic tool for retinal degeneration reveals a much higher detection rate in early-onset disease

od Shanks, Morag E, Downes, Susan M, Copley, Richard R, Lise, Stefano, Broxholme, John, Hudspith, Karl AZ, Kwasniewska, Alexandra, Davies, Wayne IL, Hankins, Mark W, Packham, Emily R, Clouston, Penny, Seller, Anneke, Wilkie, Andrew OM, Taylor, Jenny C, Ragoussis, Jiannis, Németh, Andrea H
Izdano 2013

The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis

od Pearl, Frances, Todd, Annabel, Sillitoe, Ian, Dibley, Mark, Redfern, Oliver, Lewis, Tony, Bennett, Christopher, Marsden, Russell, Grant, Alistair, Lee, David, Akpor, Adrian, Maibaum, Michael, Harrison, Andrew, Dallman, Timothy, Reeves, Gabrielle, Diboun, Ilhem, Addou, Sarah, Lise, Stefano, Johnston, Caroline, Sillero, Antonio, Thornton, Janet, Orengo, Christine
Izdano 2005

Next-generation sequencing (NGS) as a diagnostic tool for retinal degeneration reveals a much higher detection rate in early-onset disease

od Shanks, Morag E, Downes, Susan M, Copley, Richard R, Lise, Stefano, Broxholme, John, Hudspith, Karl A Z, Kwasniewska, Alexandra, Davies, Wayne I L, Hankins, Mark W, Packham, Emily R, Clouston, Penny, Seller, Anneke, Wilkie, Andrew O M, Taylor, Jenny C, Ragoussis, Jiannis, Németh, Andrea H
Izdano 2013

A Novel Strategy Combining Array-CGH, Whole-exome Sequencing and In Utero Electroporation in Rodents to Identify Causative Genes for Brain Malformations

od Conti, Valerio, Carabalona, Aurelie, Pallesi-Pocachard, Emilie, Leventer, Richard J., Schaller, Fabienne, Parrini, Elena, Deparis, Agathe A., Watrin, Françoise, Buhler, Emmanuelle, Novara, Francesca, Lise, Stefano, Pagnamenta, Alistair T., Kini, Usha, Taylor, Jenny C., Zuffardi, Orsetta, Represa, Alfonso, Keays, David Antony, Guerrini, Renzo, Falace, Antonio, Cardoso, Carlos
Izdano u J Vis Exp (2017)

Genome-wide plasma DNA methylation features of metastatic prostate cancer

od Wu, Anjui, Cremaschi, Paolo, Wetterskog, Daniel, Conteduca, Vincenza, Franceschini, Gian Marco, Kleftogiannis, Dimitrios, Jayaram, Anuradha, Sandhu, Shahneen, Wong, Stephen Q., Benelli, Matteo, Salvi, Samanta, Gurioli, Giorgia, Feber, Andrew, Pereira, Mariana Buongermino, Wingate, Anna Maria, Gonzalez-Billalebeitia, Enrique, De Giorgi, Ugo, Demichelis, Francesca, Lise, Stefano, Attard, Gerhardt
Izdano u J Clin Invest (2020)

Combination of Whole Genome Sequencing, Linkage, and Functional Studies Implicates a Missense Mutation in Titin as a Cause of Autosomal Dominant Cardiomyopathy With Features of Lef...

od Hastings, Robert, de Villiers, Carin P., Hooper, Charlotte, Ormondroyd, Liz, Pagnamenta, Alistair, Lise, Stefano, Salatino, Silvia, Knight, Samantha J.L., Taylor, Jenny C., Thomson, Kate L., Arnold, Linda, Chatziefthimiou, Spyros D., Konarev, Petr V., Wilmanns, Matthias, Ehler, Elisabeth, Ghisleni, Andrea, Gautel, Mathias, Blair, Edward, Watkins, Hugh, Gehmlich, Katja
Izdano u Circ Cardiovasc Genet (2016)

Next generation sequencing for molecular diagnosis of neurological disorders using ataxias as a model

od Németh, Andrea H., Kwasniewska, Alexandra C., Lise, Stefano, Parolin Schnekenberg, Ricardo, Becker, Esther B. E., Bera, Katarzyna D., Shanks, Morag E., Gregory, Lorna, Buck, David, Zameel Cader, M., Talbot, Kevin, de Silva, Rajith, Fletcher, Nicholas, Hastings, Rob, Jayawant, Sandeep, Morrison, Patrick J., Worth, Paul, Taylor, Malcolm, Tolmie, John, O’Regan, Mary, Valentine, Ruth, Packham, Emily, Evans, Julie, Seller, Anneke, Ragoussis, Jiannis
Izdano 2013

Ultra-sensitive mutation detection and genome-wide DNA copy number reconstruction by error corrected circulating tumor DNA sequencing

od Mansukhani, Sonia, Barber, Louise J., Kleftogiannis, Dimitrios, Moorcraft, Sing Yu, Davidson, Michael, Woolston, Andrew, Proszek, Paula Zuzanna, Griffiths, Beatrice, Fenwick, Kerry, Herman, Bram, Matthews, Nik, O’Leary, Ben, Hulkki, Sanna, Gonzalez De Castro, David, Patel, Anisha, Wotherspoon, Andrew, Okachi, Aleruchi, Rana, Isma, Begum, Ruwaida, Davies, Matthew N., Powles, Thomas, von Loga, Katharina, Hubank, Michael, Turner, Nick, Watkins, David, Chau, Ian, Cunningham, David, Lise, Stefano, Starling, Naureen, Gerlinger, Marco
Izdano u Clin Chem (2018)