Computational Vaccinology

per Davies, Matthew N., Flower, Darren R.
Publicat a Bioinformatics for Immunomics (2009)

Dissecting cancer evolution at the macro-heterogeneity and micro-heterogeneity scale

per Barber, Louise J, Davies, Matthew N, Gerlinger, Marco
Publicat a Curr Opin Genet Dev (2015)

Gene set enrichment; a problem of pathways

per Davies, Matthew N., Meaburn, Emma L., Schalkwyk, Leonard C.
Publicat 2010

Identification of Candidate Vaccine Antigens In Silico

per Flower, Darren R., Davies, Matthew N., Doytchinova, Irini A.
Publicat a Immunomic Discovery of Adjuvants and Candidate Subunit Vaccines (2012)

A Novel Predictive Technique for the MHC Class II Peptide–Binding Interaction

per Davies, Matthew N, Sansom, Clare E, Beazley, Claude, Moss, David S
Publicat 2003

Benchmarking pK(a )prediction

per Davies, Matthew N, Toseland, Christopher P, Moss, David S, Flower, Darren R
Publicat 2006

PPD v1.0—an integrated, web-accessible database of experimentally determined protein pK(a) values

per Toseland, Christopher P., McSparron, Helen, Davies, Matthew N., Flower, Darren R.
Publicat 2006

Statistical deconvolution of enthalpic energetic contributions to MHC-peptide binding affinity

per Davies, Matthew N, Hattotuwagama, Channa K, Moss, David S, Drew, Michael GB, Flower, Darren R
Publicat 2006

Computer aided selection of candidate vaccine antigens

per Flower, Darren R, Macdonald, Isabel K, Ramakrishnan, Kamna, Davies, Matthew N, Doytchinova, Irini A
Publicat 2010

To What Extent is Blood a Reasonable Surrogate for Brain in Gene Expression Studies: Estimation from Mouse Hippocampus and Spleen

per Davies, Matthew N., Lawn, Sarah, Whatley, Steven, Fernandes, Cathy, Williams, Robert W., Schalkwyk, Leonard C.
Publicat 2009

Cancer Evolution and the Limits of Predictability in Precision Cancer Medicine

per Lipinski, Kamil A., Barber, Louise J., Davies, Matthew N., Ashenden, Matthew, Sottoriva, Andrea, Gerlinger, Marco
Publicat a Trends Cancer (2016)

T-cell epitope prediction and immune complex simulation using molecular dynamics: state of the art and persisting challenges

per Flower, Darren R, Phadwal, Kanchan, Macdonald, Isabel K, Coveney, Peter V, Davies, Matthew N, Wan, Shunzhou
Publicat 2010

GPCRTree: online hierarchical classification of GPCR function

per Davies, Matthew N, Secker, Andrew, Halling-Brown, Mark, Moss, David S, Freitas, Alex A, Timmis, Jon, Clark, Edward, Flower, Darren R
Publicat 2008

Regional differences in mitochondrial DNA methylation in human post-mortem brain tissue

per Devall, Matthew, Smith, Rebecca G., Jeffries, Aaron, Hannon, Eilis, Davies, Matthew N., Schalkwyk, Leonard, Mill, Jonathan, Weedon, Michael, Lunnon, Katie
Publicat a Clin Epigenetics (2017)

Allelic Skewing of DNA Methylation Is Widespread across the Genome

per Schalkwyk, Leonard C., Meaburn, Emma L., Smith, Rebecca, Dempster, Emma L., Jeffries, Aaron R., Davies, Matthew N., Plomin, Robert, Mill, Jonathan
Publicat 2010

Generalised Anxiety Disorder – A Twin Study of Genetic Architecture, Genome-Wide Association and Differential Gene Expression

per Davies, Matthew N., Verdi, Serena, Burri, Andrea, Trzaskowski, Maciej, Lee, Minyoung, Hettema, John M., Jansen, Rick, Boomsma, Dorret I., Spector, Tim D.
Publicat a PLoS One (2015)

Age-dependent changes in mean and variance of gene expression across tissues in a twin cohort

per Viñuela, Ana, Brown, Andrew A, Buil, Alfonso, Tsai, Pei-Chien, Davies, Matthew N, Bell, Jordana T, Dermitzakis, Emmanouil T, Spector, Timothy D, Small, Kerrin S
Publicat a Hum Mol Genet (2018)

Heritability of skewed X-inactivation in female twins is tissue-specific and associated with age

per Zito, Antonino, Davies, Matthew N., Tsai, Pei-Chien, Roberts, Susanna, Andres-Ejarque, Rosa, Nardone, Stefano, Bell, Jordana T., Wong, Chloe C. Y., Small, Kerrin S.
Publicat a Nat Commun (2019)

Toward the Discovery of Vaccine Adjuvants: Coupling In Silico Screening and In Vitro Analysis of Antagonist Binding to Human and Mouse CCR4 Receptors

per Davies, Matthew N., Bayry, Jagadeesh, Tchilian, Elma Z., Vani, Janakiraman, Shaila, Melkote S., Forbes, Emily K., Draper, Simon J., Beverley, Peter C. L., Tough, David F., Flower, Darren R.
Publicat 2009

Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins

per Buil, Alfonso, Brown, Andrew A, Lappalainen, Tuuli, Viñuela, Ana, Davies, Matthew N., Zheng, H.F, Richards, J.B., Glass, Daniel, Small, Kerrin S., Durbin, Richard, Spector, Timothy D., Dermitzakis, Emmanouil T.
Publicat a Nat Genet (2014)