Tumor purity quantification by clonal DNA methylation signatures

by Benelli, Matteo, Romagnoli, Dario, Demichelis, Francesca
Published in Bioinformatics (2018)

Detecting common copy number variants in high-throughput sequencing data by using JointSLM algorithm

by Magi, Alberto, Benelli, Matteo, Yoon, Seungtai, Roviello, Franco, Torricelli, Francesca
Published 2011

WNP: A Novel Algorithm for Gene Products Annotation from Weighted Functional Networks

by Magi, Alberto, Tattini, Lorenzo, Benelli, Matteo, Giusti, Betti, Abbate, Rosanna, Ruffo, Stefano
Published 2012

Bioinformatics for Next Generation Sequencing Data

by Magi, Alberto, Benelli, Matteo, Gozzini, Alessia, Girolami, Francesca, Torricelli, Francesca, Brandi, Maria Luisa
Published 2010

Exome sequencing in primary melanoma identifies novel drivers of melanoma progression

by Montagnani, Valentina, Benelli, Matteo, Apollo, Alessandro, Pandolfi, Silvia, Gerlini, Gianni, Borgognoni, Lorenzo, Stecca, Barbara
Published in J Transl Med (2015)

Mechanisms of Resistance to CDK4/6 Inhibitors in Breast Cancer and Potential Biomarkers of Response

by Guarducci, Cristina, Bonechi, Martina, Boccalini, Giulia, Benelli, Matteo, Risi, Emanuela, Di Leo, Angelo, Malorni, Luca, Migliaccio, Ilenia
Published in Breast Care (Basel) (2017)

Thin and thick primary cutaneous melanomas reveal distinct patterns of somatic copy number alterations

by Montagnani, Valentina, Benelli, Matteo, Apollo, Alessandro, Pescucci, Chiara, Licastro, Danilo, Urso, Carmelo, Gerlini, Gianni, Borgognoni, Lorenzo, Luzzatto, Lucio, Stecca, Barbara
Published in Oncotarget (2016)

Metabolomics to Assess Response to Immune Checkpoint Inhibitors in Patients with Non-Small-Cell Lung Cancer

by Ghini, Veronica, Laera, Letizia, Fantechi, Beatrice, del Monte, Francesca, Benelli, Matteo, McCartney, Amelia, Tenori, Leonardo, Luchinat, Claudio, Pozzessere, Daniele
Published in Cancers (Basel) (2020)

Circulating Biomarkers of CDK4/6 Inhibitors Response in Hormone Receptor Positive and HER2 Negative Breast Cancer

by Migliaccio, Ilenia, Leo, Angela, Galardi, Francesca, Guarducci, Cristina, Fusco, Giulio Maria, Benelli, Matteo, Di Leo, Angelo, Biganzoli, Laura, Malorni, Luca
Published in Cancers (Basel) (2021)

Cell-Free DNA-Methylation-Based Methods and Applications in Oncology

by Galardi, Francesca, De Luca, Francesca, Romagnoli, Dario, Biagioni, Chiara, Moretti, Erica, Biganzoli, Laura, Di Leo, Angelo, Migliaccio, Ilenia, Malorni, Luca, Benelli, Matteo
Published in Biomolecules (2020)

Sphingosine 1-Phosphate Induces Differentiation of Mesoangioblasts towards Smooth Muscle. A Role for GATA6

by Donati, Chiara, Marseglia, Giuseppina, Magi, Alberto, Serratì, Simona, Cencetti, Francesca, Bernacchioni, Caterina, Nannetti, Genni, Benelli, Matteo, Brunelli, Silvia, Torricelli, Francesca, Cossu, Giulio, Bruni, Paola
Published 2011

A novel brain tumour model in zebrafish reveals the role of YAP activation in MAPK- and PI3K-induced malignant growth

by Mayrhofer, Marie, Gourain, Victor, Reischl, Markus, Affaticati, Pierre, Jenett, Arnim, Joly, Jean-Stephane, Benelli, Matteo, Demichelis, Francesca, Poliani, Pietro Luigi, Sieger, Dirk, Mione, Marina
Published in Dis Model Mech (2017)

ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data

by Romagnoli, Dario, Boccalini, Giulia, Bonechi, Martina, Biagioni, Chiara, Fassan, Paola, Bertorelli, Roberto, Sanctis, Veronica De, Leo, Angelo Di, Migliaccio, Ilenia, Malorni, Luca, Benelli, Matteo
Published in BMC Genomics (2018)

Contemporary genetic testing in inherited cardiac disease: tools, ethical issues, and clinical applications

by Girolami, Francesca, Frisso, Giulia, Benelli, Matteo, Crotti, Lia, Iascone, Maria, Mango, Ruggiero, Mazzaccara, Cristina, Pilichou, Kalliope, Arbustini, Eloisa, Tomberli, Benedetta, Limongelli, Giuseppe, Basso, Cristina, Olivotto, Iacopo
Published in J Cardiovasc Med (Hagerstown) (2018)

Tumor Necrosis Factor α Influences Phenotypic Plasticity and Promotes Epigenetic Changes in Human Basal Forebrain Cholinergic Neuroblasts

by Guarnieri, Giulia, Sarchielli, Erica, Comeglio, Paolo, Herrera-Puerta, Erika, Piaceri, Irene, Nacmias, Benedetta, Benelli, Matteo, Kelsey, Gavin, Maggi, Mario, Gallina, Pasquale, Vannelli, Gabriella Barbara, Morelli, Annamaria
Published in Int J Mol Sci (2020)

A Systematic Assessment of Accuracy in Detecting Somatic Mosaic Variants by Deep Amplicon Sequencing: Application to NF2 Gene

by Contini, Elisa, Paganini, Irene, Sestini, Roberta, Candita, Luisa, Capone, Gabriele Lorenzo, Barbetti, Lorenzo, Falconi, Serena, Frusconi, Sabrina, Giotti, Irene, Giuliani, Costanza, Torricelli, Francesca, Benelli, Matteo, Papi, Laura
Published in PLoS One (2015)

Expanding the mutational spectrum of LZTR1 in schwannomatosis

by Paganini, Irene, Chang, Vivian Y, Capone, Gabriele L, Vitte, Jeremie, Benelli, Matteo, Barbetti, Lorenzo, Sestini, Roberta, Trevisson, Eva, Hulsebos, Theo JM, Giovannini, Marco, Nelson, Stanley F, Papi, Laura
Published in Eur J Hum Genet (2015)

LEADeR role of miR-205 host gene as long noncoding RNA in prostate basal cell differentiation

by Profumo, Valentina, Forte, Barbara, Percio, Stefano, Rotundo, Federica, Doldi, Valentina, Ferrari, Elena, Fenderico, Nicola, Dugo, Matteo, Romagnoli, Dario, Benelli, Matteo, Valdagni, Riccardo, Dolfini, Diletta, Zaffaroni, Nadia, Gandellini, Paolo
Published in Nat Commun (2019)

Mechanisms of Resistance to CDK4/6 Inhibitors: Potential Implications and Biomarkers for Clinical Practice

by McCartney, Amelia, Migliaccio, Ilenia, Bonechi, Martina, Biagioni, Chiara, Romagnoli, Dario, De Luca, Francesca, Galardi, Francesca, Risi, Emanuela, De Santo, Irene, Benelli, Matteo, Malorni, Luca, Di Leo, Angelo
Published in Front Oncol (2019)

Glucose Metabolic Reprogramming of ER(+) Breast Cancer in Acquired Resistance to the CDK4/6 Inhibitor Palbociclib

by Lorito, Nicla, Bacci, Marina, Smiriglia, Alfredo, Mannelli, Michele, Parri, Matteo, Comito, Giuseppina, Ippolito, Luigi, Giannoni, Elisa, Bonechi, Martina, Benelli, Matteo, Migliaccio, Ilenia, Malorni, Luca, Chiarugi, Paola, Morandi, Andrea
Published in Cells (2020)