Teaching the Fundamentals of Biological Data Integration Using Classroom Games

Por Schneider, Maria Victoria, Jimenez, Rafael C.
Publicado em 2012

KEGGViewer, a BioJS component to visualize KEGG Pathways

Por Villaveces, Jose M., Jimenez, Rafael C., Habermann, Bianca H.
Publicado em 2014

PsicquicGraph, a BioJS component to visualize molecular interactions from PSICQUIC servers

Por Villaveces, Jose M., Jimenez, Rafael C., Habermann, Bianca H.
Publicado em 2014

General guidelines for biomedical software development

Por Silva, Luis Bastiao, Jimenez, Rafael C., Blomberg, Niklas, Luis Oliveira, José
Publicado no F1000Res (2017)

Data integration in biological research: an overview

Por Lapatas, Vasileios, Stefanidakis, Michalis, Jimenez, Rafael C., Via, Allegra, Schneider, Maria Victoria
Publicado no J Biol Res (Thessalon) (2015)

wigExplorer, a BioJS component to visualise wig data

Por Thanki, Anil S., Jimenez, Rafael C., Kaithakottil, Gemy G., Corpas, Manuel, Davey, Robert P.
Publicado no F1000Res (2016)

OntoDas – a tool for facilitating the construction of complex queries to the Gene Ontology

Por O'Neill, Kieran, Garcia, Alexander, Schwegmann, Anita, Jimenez, Rafael C, Jacobson, Dan, Hermjakob, Henning
Publicado em 2008

easyDAS: Automatic creation of DAS servers

Por Gel Moreno, Bernat, Jenkinson, Andrew M, Jimenez, Rafael C, Messeguer Peypoch, Xavier, Hermjakob, Henning
Publicado em 2011

DAS Writeback: A Collaborative Annotation System

Por Salazar, Gustavo A, Jimenez, Rafael C, Garcia, Alexander, Hermjakob, Henning, Mulder, Nicola, Blake, Edwin
Publicado em 2011

myKaryoView: A Light-Weight Client for Visualization of Genomic Data

Por Jimenez, Rafael C., Salazar, Gustavo A., Gel, Bernat, Dopazo, Joaquin, Mulder, Nicola, Corpas, Manuel
Publicado em 2011

Dasty3, a WEB framework for DAS

Por Villaveces, Jose M., Jimenez, Rafael C., Garcia, Leyla J., Salazar, Gustavo A., Gel, Bernat, Mulder, Nicola, Martin, Maria, Garcia, Alexander, Hermjakob, Henning
Publicado em 2011

A new reference implementation of the PSICQUIC web service

Por del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Jimenez, Rafael C., Galeota, Eugenia, Launay, Guillaume, Goll, Johannes, Breuer, Karin, Ono, Keiichiro, Salwinski, Lukasz, Hermjakob, Henning
Publicado em 2013

MyDas, an Extensible Java DAS Server

Por Salazar, Gustavo A., García, Leyla J., Jones, Philip, Jimenez, Rafael C., Quinn, Antony F., Jenkinson, Andrew M., Mulder, Nicola, Martin, Maria, Hunter, Sarah, Hermjakob, Henning
Publicado em 2012

The Protein Feature Ontology: A Tool for the Unification of Protein Annotations

Por Reeves, Gabrielle A., Eilbeck, Karen, Magrane, Michele, O'Donovan, Claire, Montecchi-Palazzi, Luisa, Harris, Midori A., Jimenez, Rafael C., Prlic, Andreas, Hermjakob, Henning, Thornton, Janet M.
Publicado em 2008

Top 10 metrics for life science software good practices

Por Artaza, Haydee, Chue Hong, Neil, Corpas, Manuel, Corpuz, Angel, Hooft, Rob, Jimenez, Rafael C., Leskošek, Brane, Olivier, Brett G., Stourac, Jan, Svobodová Vařeková, Radka, Van Parys, Thomas, Vaughan, Daniel
Publicado no F1000Res (2016)

Future opportunities and trends for e-infrastructures and life sciences: going beyond the grid to enable life science data analysis

Por Duarte, Afonso M. S., Psomopoulos, Fotis E., Blanchet, Christophe, Bonvin, Alexandre M. J. J., Corpas, Manuel, Franc, Alain, Jimenez, Rafael C., de Lucas, Jesus M., Nyrönen, Tommi, Sipos, Gergely, Suhr, Stephanie B.
Publicado no Front Genet (2015)

Integrating biological data – the Distributed Annotation System

Por Jenkinson, Andrew M, Albrecht, Mario, Birney, Ewan, Blankenburg, Hagen, Down, Thomas, Finn, Robert D, Hermjakob, Henning, Hubbard, Tim JP, Jimenez, Rafael C, Jones, Philip, Kähäri, Andreas, Kulesha, Eugene, Macías, José R, Reeves, Gabrielle A, Prlić, Andreas
Publicado em 2008

BioJS: an open source JavaScript framework for biological data visualization

Por Gómez, John, García, Leyla J., Salazar, Gustavo A., Villaveces, Jose, Gore, Swanand, García, Alexander, Martín, Maria J., Launay, Guillaume, Alcántara, Rafael, del-Toro, Noemi, Dumousseau, Marine, Orchard, Sandra, Velankar, Sameer, Hermjakob, Henning, Zong, Chenggong, Ping, Peipei, Corpas, Manuel, Jiménez, Rafael C.
Publicado em 2013

The IntAct molecular interaction database in 2012

Por Kerrien, Samuel, Aranda, Bruno, Breuza, Lionel, Bridge, Alan, Broackes-Carter, Fiona, Chen, Carol, Duesbury, Margaret, Dumousseau, Marine, Feuermann, Marc, Hinz, Ursula, Jandrasits, Christine, Jimenez, Rafael C., Khadake, Jyoti, Mahadevan, Usha, Masson, Patrick, Pedruzzi, Ivo, Pfeiffenberger, Eric, Porras, Pablo, Raghunath, Arathi, Roechert, Bernd, Orchard, Sandra, Hermjakob, Henning
Publicado em 2012

Best practices in bioinformatics training for life scientists

Por Via, Allegra, Blicher, Thomas, Bongcam-Rudloff, Erik, Brazas, Michelle D., Brooksbank, Cath, Budd, Aidan, De Las Rivas, Javier, Dreyer, Jacqueline, Fernandes, Pedro L., van Gelder, Celia, Jacob, Joachim, Jimenez, Rafael C., Loveland, Jane, Moran, Federico, Mulder, Nicola, Nyrönen, Tommi, Rother, Kristian, Schneider, Maria Victoria, Attwood, Teresa K.
Publicado em 2013