SCOOP: a simple method for identification of novel protein superfamily relationships

by Bateman, Alex, Finn, Robert D.
Published 2007

Predicting active site residue annotations in the Pfam database

by Mistry, Jaina, Bateman, Alex, Finn, Robert D
Published 2007

DUFs: families in search of function

by Bateman, Alex, Coggill, Penny, Finn, Robert D.
Published 2010

3DPatch: fast 3D structure visualization with residue conservation

by Jakubec, David, Vondrášek, Jiří, Finn, Robert D
Published in Bioinformatics (2019)

HMMER web server: interactive sequence similarity searching

by Finn, Robert D., Clements, Jody, Eddy, Sean R.
Published 2011

Making your database available through Wikipedia: the pros and cons

by Finn, Robert D., Gardner, Paul P., Bateman, Alex
Published 2012

Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models

by Wheeler, Travis J, Clements, Jody, Finn, Robert D
Published 2014

TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations

by Tang, Haiming, Finn, Robert D, Thomas, Paul D
Published in Bioinformatics (2019)

Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC

by Saary, Paul, Mitchell, Alex L., Finn, Robert D.
Published in Genome Biol (2020)

iPfam: a database of protein family and domain interactions found in the Protein Data Bank

by Finn, Robert D., Miller, Benjamin L., Clements, Jody, Bateman, Alex
Published 2014

Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments

by Almeida, Alexandre, Mitchell, Alex L, Tarkowska, Aleksandra, Finn, Robert D
Published in Gigascience (2018)

Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics

by Arıkan, Muzaffer, Mitchell, Alex L., Finn, Robert D., Gürel, Filiz
Published in J Food Sci (2020)

Unsaturated fatty acid regulation of cytochrome P450 expression via a CAR-dependent pathway

by Finn, Robert D., Henderson, Colin J., Scott, Claire L., Wolf, C. Roland
Published 2008

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

by Mistry, Jaina, Finn, Robert D., Eddy, Sean R., Bateman, Alex, Punta, Marco
Published 2013

Present and future potential of plant-derived products to control arthropods of veterinary and medical significance

by George, David R, Finn, Robert D, Graham, Kirsty M, Sparagano, Olivier AE
Published 2014

Escherichia coli RNA polymerase core and holoenzyme structures

by Finn, Robert D., Orlova, Elena V., Gowen, Brent, Buck, Martin, van Heel, Marin
Published 2000

Phospholipid scramblases and Tubby-like proteins belong to a new superfamily of membrane tethered transcription factors

by Bateman, Alex, Finn, Robert D., Sims, Peter J., Wiedmer, Therese, Biegert, Andreas, Söding, Johannes
Published 2009

Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes

by Upadhyay, Amit A., Fleetwood, Aaron D., Adebali, Ogun, Finn, Robert D., Zhulin, Igor B.
Published in PLoS Comput Biol (2016)

Integrating sequence and structural biology with DAS

by Prlić, Andreas, Down, Thomas A, Kulesha, Eugene, Finn, Robert D, Kähäri, Andreas, Hubbard, Tim JP
Published 2007

ProServer: a simple, extensible Perl DAS server

by Finn, Robert D., Stalker, James W., Jackson, David K., Kulesha, Eugene, Clements, Jody, Pettett, Roger
Published 2007