Lack of evidence for conserved secondary structure in long noncoding RNAs

Por Rivas, Elena, Clements, Jody, Eddy, Sean R.
Publicado no Nat Methods (2016)

Estimating the power of sequence covariation for detecting conserved RNA structure

Por Rivas, Elena, Clements, Jody, Eddy, Sean R
Publicado no Bioinformatics (2020)

HMMER web server: interactive sequence similarity searching

Por Finn, Robert D., Clements, Jody, Eddy, Sean R.
Publicado em 2011

Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models

Por Wheeler, Travis J, Clements, Jody, Finn, Robert D
Publicado em 2014

iPfam: a database of protein family and domain interactions found in the Protein Data Bank

Por Finn, Robert D., Miller, Benjamin L., Clements, Jody, Bateman, Alex
Publicado em 2014

ProServer: a simple, extensible Perl DAS server

Por Finn, Robert D., Stalker, James W., Jackson, David K., Kulesha, Eugene, Clements, Jody, Pettett, Roger
Publicado em 2007

Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala

Por O'Leary, Timothy P, Sullivan, Kaitlin E, Wang, Lihua, Clements, Jody, Lemire, Andrew L, Cembrowski, Mark S
Publicado no eLife (2020)

The subiculum is a patchwork of discrete subregions

Por Cembrowski, Mark S, Wang, Lihua, Lemire, Andrew L, Copeland, Monique, DiLisio, Salvatore F, Clements, Jody, Spruston, Nelson
Publicado no eLife (2018)

HMMER web server: 2015 update

Por Finn, Robert D., Clements, Jody, Arndt, William, Miller, Benjamin L., Wheeler, Travis J., Schreiber, Fabian, Bateman, Alex, Eddy, Sean R.
Publicado no Nucleic Acids Res (2015)

Dfam: a database of repetitive DNA based on profile hidden Markov models

Por Wheeler, Travis J., Clements, Jody, Eddy, Sean R., Hubley, Robert, Jones, Thomas A., Jurka, Jerzy, Smit, Arian F. A., Finn, Robert D.
Publicado em 2013

The Dfam database of repetitive DNA families

Por Hubley, Robert, Finn, Robert D., Clements, Jody, Eddy, Sean R., Jones, Thomas A., Bao, Weidong, Smit, Arian F.A., Wheeler, Travis J.
Publicado no Nucleic Acids Res (2016)

Pfam: the protein families database

Por Finn, Robert D., Bateman, Alex, Clements, Jody, Coggill, Penelope, Eberhardt, Ruth Y., Eddy, Sean R., Heger, Andreas, Hetherington, Kirstie, Holm, Liisa, Mistry, Jaina, Sonnhammer, Erik L. L., Tate, John, Punta, Marco
Publicado em 2014

The Pfam protein families database

Por Punta, Marco, Coggill, Penny C., Eberhardt, Ruth Y., Mistry, Jaina, Tate, John, Boursnell, Chris, Pang, Ningze, Forslund, Kristoffer, Ceric, Goran, Clements, Jody, Heger, Andreas, Holm, Liisa, Sonnhammer, Erik L. L., Eddy, Sean R., Bateman, Alex, Finn, Robert D.
Publicado em 2012

Mutation analysis of 24 known cancer genes in the NCI-60 cell line set

Por Ikediobi, Ogechi N., Davies, Helen, Bignell, Graham, Edkins, Sarah, Stevens, Claire, O’Meara, Sarah, Santarius, Thomas, Avis, Tim, Barthorpe, Syd, Brackenbury, Lisa, Buck, Gemma, Butler, Adam, Clements, Jody, Cole, Jennifer, Dicks, Ed, Forbes, Simon, Gray, Kristian, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jonathan, Hunter, Chris, Jenkinson, Andy, Jones, David, Kosmidou, Vivienne, Lugg, Richard, Menzies, Andrew, Mironenko, Tatiana, Parker, Adrian, Perry, Janet, Raine, Keiran, Richardson, David, Shepherd, Rebecca, Small, Alex, Smith, Raffaella, Solomon, Helen, Stephens, Philip, Teague, Jon, Tofts, Calli, Varian, Jennifer, Webb, Tony, West, Sofie, Widaa, Sara, Yates, Andy, Reinhold, William, Weinstein, John N., Stratton, Michael R., Futreal, P. Andrew, Wooster, Richard
Publicado em 2006

A Hypermutation Phenotype and Somatic MSH6 Mutations in Recurrent Human Malignant Gliomas after Alkylator Chemotherapy

Por Hunter, Chris, Smith, Raffaella, Cahill, Daniel P., Stephens, Philip, Stevens, Claire, Teague, Jon, Greenman, Chris, Edkins, Sarah, Bignell, Graham, Davies, Helen, O’Meara, Sarah, Parker, Adrian, Avis, Tim, Barthorpe, Syd, Brackenbury, Lisa, Buck, Gemma, Butler, Adam, Clements, Jody, Cole, Jennifer, Dicks, Ed, Forbes, Simon, Gorton, Matthew, Gray, Kristian, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jonathon, Jenkinson, Andy, Jones, David, Kosmidou, Vivienne, Laman, Ross, Lugg, Richard, Menzies, Andrew, Perry, Janet, Petty, Robert, Raine, Keiran, Richardson, David, Shepherd, Rebecca, Small, Alexandra, Solomon, Helen, Tofts, Calli, Varian, Jennifer, West, Sofie, Widaa, Sara, Yates, Andy, Easton, Douglas F., Riggins, Gregory, Roy, Jennifer E., Levine, Kymberly K., Mueller, Wolf, Batchelor, Tracy T., Louis, David N., Stratton, Michael R., Andrew Futreal, P., Wooster, Richard
Publicado no Cancer Res (2006)

Sequence Analysis of the Protein Kinase Gene Family in Human Testicular Germ-Cell Tumors of Adolescents and Adults

Por Bignell, Graham, Smith, Raffaella, Hunter, Chris, Stephens, Philip, Davies, Helen, Greenman, Chris, Teague, Jon, Butler, Adam, Edkins, Sarah, Stevens, Claire, O’Meara, Sarah, Parker, Adrian, Avis, Tim, Barthorpe, Syd, Brackenbury, Lisa, Buck, Gemma, Clements, Jody, Cole, Jennifer, Dicks, Ed, Edwards, Ken, Forbes, Simon, Gorton, Matthew, Gray, Kristian, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jonathon, Jones, David, Kosmidou, Vivienne, Laman, Ross, Lugg, Richard, Menzies, Andrew, Perry, Janet, Petty, Robert, Raine, Keiran, Shepherd, Rebecca, Small, Alexandra, Solomon, Helen, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, Webb, Anthony, West, Sofie, Widaa, Sara, Yates, Andy, Gillis, Ad J. M., Stoop, Hans J., van Gurp, Ruud J. H. L. M., Oosterhuis, J. Wolter, Looijenga, Leendert H. J., Futreal, P. Andrew, Wooster, Richard, Stratton, Michael R.
Publicado no Genes Chromosomes Cancer (2006)

Patterns of somatic mutation in human cancer genomes

Por Greenman, Christopher, Stephens, Philip, Smith, Raffaella, Dalgliesh, Gillian L., Hunter, Christopher, Bignell, Graham, Davies, Helen, Teague, Jon, Butler, Adam, Stevens, Claire, Edkins, Sarah, O'Meara, Sarah, Vastrik, Imre, Schmidt, Esther E., Avis, Tim, Barthorpe, Syd, Bhamra, Gurpreet, Buck, Gemma, Choudhury, Bhudipa, Clements, Jody, Cole, Jennifer, Dicks, Ed, Forbes, Simon, Gray, Kris, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jon, Jenkinson, Andy, Jones, David, Menzies, Andy, Mironenko, Tatiana, Perry, Janet, Raine, Keiran, Richardson, Dave, Shepherd, Rebecca, Small, Alexandra, Tofts, Calli, Varian, Jennifer, Webb, Tony, West, Sofie, Widaa, Sara, Yates, Andy, Cahill, Daniel P., Louis, David N., Goldstraw, Peter, Nicholson, Andrew G., Brasseur, Francis, Looijenga, Leendert, Weber, Barbara L., Chiew, Yoke-Eng, deFazio, Anna, Greaves, Mel F., Green, Anthony R., Campbell, Peter, Birney, Ewan, Easton, Douglas F., Chenevix-Trench, Georgia, Tan, Min-Han, Khoo, Sok Kean, Teh, Bin Tean, Yuen, Siu Tsan, Leung, Suet Yi, Wooster, Richard, Futreal, P. Andrew, Stratton, Michael R.
Publicado em 2007

A connectome and analysis of the adult Drosophila central brain

Por Scheffer, Louis K, Xu, C Shan, Januszewski, Michal, Lu, Zhiyuan, Takemura, Shin-ya, Hayworth, Kenneth J, Huang, Gary B, Shinomiya, Kazunori, Maitlin-Shepard, Jeremy, Berg, Stuart, Clements, Jody, Hubbard, Philip M, Katz, William T, Umayam, Lowell, Zhao, Ting, Ackerman, David, Blakely, Tim, Bogovic, John, Dolafi, Tom, Kainmueller, Dagmar, Kawase, Takashi, Khairy, Khaled A, Leavitt, Laramie, Li, Peter H, Lindsey, Larry, Neubarth, Nicole, Olbris, Donald J, Otsuna, Hideo, Trautman, Eric T, Ito, Masayoshi, Bates, Alexander S, Goldammer, Jens, Wolff, Tanya, Svirskas, Robert, Schlegel, Philipp, Neace, Erika, Knecht, Christopher J, Alvarado, Chelsea X, Bailey, Dennis A, Ballinger, Samantha, Borycz, Jolanta A, Canino, Brandon S, Cheatham, Natasha, Cook, Michael, Dreher, Marisa, Duclos, Octave, Eubanks, Bryon, Fairbanks, Kelli, Finley, Samantha, Forknall, Nora, Francis, Audrey, Hopkins, Gary Patrick, Joyce, Emily M, Kim, SungJin, Kirk, Nicole A, Kovalyak, Julie, Lauchie, Shirley A, Lohff, Alanna, Maldonado, Charli, Manley, Emily A, McLin, Sari, Mooney, Caroline, Ndama, Miatta, Ogundeyi, Omotara, Okeoma, Nneoma, Ordish, Christopher, Padilla, Nicholas, Patrick, Christopher M, Paterson, Tyler, Phillips, Elliott E, Phillips, Emily M, Rampally, Neha, Ribeiro, Caitlin, Robertson, Madelaine K, Rymer, Jon Thomson, Ryan, Sean M, Sammons, Megan, Scott, Anne K, Scott, Ashley L, Shinomiya, Aya, Smith, Claire, Smith, Kelsey, Smith, Natalie L, Sobeski, Margaret A, Suleiman, Alia, Swift, Jackie, Takemura, Satoko, Talebi, Iris, Tarnogorska, Dorota, Tenshaw, Emily, Tokhi, Temour, Walsh, John J, Yang, Tansy, Horne, Jane Anne, Li, Feng, Parekh, Ruchi, Rivlin, Patricia K, Jayaraman, Vivek, Costa, Marta, Jefferis, Gregory SXE, Ito, Kei, Saalfeld, Stephan, George, Reed, Meinertzhagen, Ian A, Rubin, Gerald M, Hess, Harald F, Jain, Viren, Plaza, Stephen M
Publicado no eLife (2020)