nhmmer: DNA homology search with profile HMMs

Por Wheeler, Travis J., Eddy, Sean R.
Publicado em 2013

Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models

Por Wheeler, Travis J, Clements, Jody, Finn, Robert D
Publicado em 2014

Complete Nucleomorph Genome Sequence of the Nonphotosynthetic Alga Cryptomonas paramecium Reveals a Core Nucleomorph Gene Set

Por Tanifuji, Goro, Onodera, Naoko T., Wheeler, Travis J., Dlutek, Marlena, Donaher, Natalie, Archibald, John M.
Publicado em 2010

HMMER web server: 2015 update

Por Finn, Robert D., Clements, Jody, Arndt, William, Miller, Benjamin L., Wheeler, Travis J., Schreiber, Fabian, Bateman, Alex, Eddy, Sean R.
Publicado no Nucleic Acids Res (2015)

Dfam: a database of repetitive DNA based on profile hidden Markov models

Por Wheeler, Travis J., Clements, Jody, Eddy, Sean R., Hubley, Robert, Jones, Thomas A., Jurka, Jerzy, Smit, Arian F. A., Finn, Robert D.
Publicado em 2013

The Dfam database of repetitive DNA families

Por Hubley, Robert, Finn, Robert D., Clements, Jody, Eddy, Sean R., Jones, Thomas A., Bao, Weidong, Smit, Arian F.A., Wheeler, Travis J.
Publicado no Nucleic Acids Res (2016)

A call for benchmarking transposable element annotation methods

Por Hoen, Douglas R., Hickey, Glenn, Bourque, Guillaume, Casacuberta, Josep, Cordaux, Richard, Feschotte, Cédric, Fiston-Lavier, Anna-Sophie, Hua-Van, Aurélie, Hubley, Robert, Kapusta, Aurélie, Lerat, Emmanuelle, Maumus, Florian, Pollock, David D., Quesneville, Hadi, Smit, Arian, Wheeler, Travis J., Bureau, Thomas E., Blanchette, Mathieu
Publicado no Mob DNA (2015)