SPR Distance Computation for Unrooted Trees

द्वारा Hickey, Glenn, Dehne, Frank, Rau-Chaplin, Andrew, Blouin, Christian
प्रकाशित 2008

A unifying model of genome evolution under parsimony

द्वारा Paten, Benedict, Zerbino, Daniel R, Hickey, Glenn, Haussler, David
प्रकाशित 2014

HAL: a hierarchical format for storing and analyzing multiple genome alignments

द्वारा Hickey, Glenn, Paten, Benedict, Earl, Dent, Zerbino, Daniel, Haussler, David
प्रकाशित 2013

Representing and decomposing genomic structural variants as balanced integer flows on sequence graphs

द्वारा Zerbino, Daniel R., Ballinger, Tracy, Paten, Benedict, Hickey, Glenn, Haussler, David
में प्रकाशित BMC Bioinformatics (2016)

Superbubbles, Ultrabubbles, and Cacti

द्वारा Paten, Benedict, Eizenga, Jordan M., Rosen, Yohei M., Novak, Adam M., Garrison, Erik, Hickey, Glenn
में प्रकाशित J Comput Biol (2018)

Sequence tube maps: making graph genomes intuitive to commuters

द्वारा Beyer, Wolfgang, Novak, Adam M, Hickey, Glenn, Chan, Jeffrey, Tan, Vanessa, Paten, Benedict, Zerbino, Daniel R
में प्रकाशित Bioinformatics (2019)

Building a Pan-Genome Reference for a Population

द्वारा Nguyen, Ngan, Hickey, Glenn, Zerbino, Daniel R., Raney, Brian, Earl, Dent, Armstrong, Joel, Kent, W. James, Haussler, David, Paten, Benedict
में प्रकाशित J Comput Biol (2015)

Comparative assembly hubs: Web-accessible browsers for comparative genomics

द्वारा Nguyen, Ngan, Hickey, Glenn, Raney, Brian J., Armstrong, Joel, Clawson, Hiram, Zweig, Ann, Karolchik, Donna, Kent, William James, Haussler, David, Paten, Benedict
में प्रकाशित Bioinformatics (2014)

Genotyping structural variants in pangenome graphs using the vg toolkit

द्वारा Hickey, Glenn, Heller, David, Monlong, Jean, Sibbesen, Jonas A., Sirén, Jouni, Eizenga, Jordan, Dawson, Eric T., Garrison, Erik, Novak, Adam M., Paten, Benedict
में प्रकाशित Genome Biol (2020)

Efficient dynamic variation graphs

द्वारा Eizenga, Jordan M, Novak, Adam M, Kobayashi, Emily, Villani, Flavia, Cisar, Cecilia, Heumos, Simon, Hickey, Glenn, Colonna, Vincenza, Paten, Benedict, Garrison, Erik
में प्रकाशित Bioinformatics (2020)

Variation graph toolkit improves read mapping by representing genetic variation in the reference

द्वारा Garrison, Erik, Sirén, Jouni, Novak, Adam M., Hickey, Glenn, Eizenga, Jordan M., Dawson, Eric T., Jones, William, Garg, Shilpa, Markello, Charles, Lin, Michael F., Paten, Benedict, Durbin, Richard
में प्रकाशित Nat Biotechnol (2018)

Pangenome graphs

द्वारा Eizenga, Jordan M, Novak, Adam M, Sibbesen, Jonas A, Heumos, Simon, Ghaffaari, Ali, Hickey, Glenn, Chang, Xian, Seaman, Josiah D, Rounthwaite, Robin, Ebler, Jana, Rautiainen, Mikko, Garg, Shilpa, Paten, Benedict, Marschall, Tobias, Sirén, Jouni, Garrison, Erik
में प्रकाशित Annu Rev Genomics Hum Genet (2020)

A call for benchmarking transposable element annotation methods

द्वारा Hoen, Douglas R., Hickey, Glenn, Bourque, Guillaume, Casacuberta, Josep, Cordaux, Richard, Feschotte, Cédric, Fiston-Lavier, Anna-Sophie, Hua-Van, Aurélie, Hubley, Robert, Kapusta, Aurélie, Lerat, Emmanuelle, Maumus, Florian, Pollock, David D., Quesneville, Hadi, Smit, Arian, Wheeler, Travis J., Bureau, Thomas E., Blanchette, Mathieu
में प्रकाशित Mob DNA (2015)

Progressive Cactus is a multiple-genome aligner for the thousand-genome era

द्वारा Armstrong, Joel, Hickey, Glenn, Diekhans, Mark, Fiddes, Ian T., Novak, Adam M., Deran, Alden, Fang, Qi, Xie, Duo, Feng, Shaohong, Stiller, Josefin, Genereux, Diane, Johnson, Jeremy, Marinescu, Voichita Dana, Alföldi, Jessica, Harris, Robert S., Lindblad-Toh, Kerstin, Haussler, David, Karlsson, Elinor, Jarvis, Erich D., Zhang, Guojie, Paten, Benedict
में प्रकाशित Nature (2020)

Alignathon: a competitive assessment of whole-genome alignment methods

द्वारा Earl, Dent, Nguyen, Ngan, Hickey, Glenn, Harris, Robert S., Fitzgerald, Stephen, Beal, Kathryn, Seledtsov, Igor, Molodtsov, Vladimir, Raney, Brian J., Clawson, Hiram, Kim, Jaebum, Kemena, Carsten, Chang, Jia-Ming, Erb, Ionas, Poliakov, Alexander, Hou, Minmei, Herrero, Javier, Kent, William James, Solovyev, Victor, Darling, Aaron E., Ma, Jian, Notredame, Cedric, Brudno, Michael, Dubchak, Inna, Haussler, David, Paten, Benedict
में प्रकाशित Genome Res (2014)

Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling

द्वारा Rice, Edward S., Kohno, Satomi, John, John St., Pham, Son, Howard, Jonathan, Lareau, Liana F., O'Connell, Brendan L., Hickey, Glenn, Armstrong, Joel, Deran, Alden, Fiddes, Ian, Platt, Roy N., Gresham, Cathy, McCarthy, Fiona, Kern, Colin, Haan, David, Phan, Tan, Schmidt, Carl, Sanford, Jeremy R., Ray, David A., Paten, Benedict, Guillette, Louis J., Green, Richard E.
में प्रकाशित Genome Res (2017)

The UCSC Genome Browser database: 2015 update

द्वारा Rosenbloom, Kate R., Armstrong, Joel, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Dreszer, Timothy R., Fujita, Pauline A., Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A., Heitner, Steve, Hickey, Glenn, Hinrichs, Angie S., Hubley, Robert, Karolchik, Donna, Learned, Katrina, Lee, Brian T., Li, Chin H., Miga, Karen H., Nguyen, Ngan, Paten, Benedict, Raney, Brian J., Smit, Arian F. A., Speir, Matthew L., Zweig, Ann S., Haussler, David, Kuhn, Robert M., Kent, W. James
में प्रकाशित Nucleic Acids Res (2014)

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

द्वारा Green, Richard E, Braun, Edward L, Armstrong, Joel, Earl, Dent, Nguyen, Ngan, Hickey, Glenn, Vandewege, Michael W, St John, John A, Capella-Gutiérrez, Salvador, Castoe, Todd A, Kern, Colin, Fujita, Matthew K, Opazo, Juan C, Jurka, Jerzy, Kojima, Kenji K, Caballero, Juan, Hubley, Robert M, Smit, Arian F, Platt, Roy N, Lavoie, Christine A, Ramakodi, Meganathan P, Finger, John W, Suh, Alexander, Isberg, Sally R, Miles, Lee, Chong, Amanda Y, Jaratlerdsiri, Weerachai, Gongora, Jaime, Moran, Christopher, Iriarte, Andrés, McCormack, John, Burgess, Shane C, Edwards, Scott V, Lyons, Eric, Williams, Christina, Breen, Matthew, Howard, Jason T, Gresham, Cathy R, Peterson, Daniel G, Schmitz, Jürgen, Pollock, David D, Haussler, David, Triplett, Eric W, Zhang, Guojie, Irie, Naoki, Jarvis, Erich D, Brochu, Christopher A, Schmidt, Carl J, McCarthy, Fiona M, Faircloth, Brant C, Hoffmann, Federico G, Glenn, Travis C, Gabaldón, Toni, Paten, Benedict, Ray, David A
में प्रकाशित Science (2014)