Centromeric Satellite DNAs: Hidden Sequence Variation in the Human Population

Por Miga, Karen H.
Publicado no Genes (Basel) (2019)

Centromere studies in the era of ‘telomere-to-telomere’ genomics

Por Miga, Karen H.
Publicado no Exp Cell Res (2020)

Breaking through the unknowns of the human reference genome

Por Miga, Karen H.
Publicado no Nature (2021)

Utilizing mapping targets of sequences underrepresented in the reference assembly to reduce false positive alignments

Por Miga, Karen H., Eisenhart, Christopher, Kent, W. James
Publicado no Nucleic Acids Res (2015)

Genomic Characterization of Large Heterochromatic Gaps in the Human Genome Assembly

Por Altemose, Nicolas, Miga, Karen H., Maggioni, Mauro, Willard, Huntington F.
Publicado em 2014

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing

Por Sevim, Volkan, Bashir, Ali, Chin, Chen-Shan, Miga, Karen H.
Publicado no Bioinformatics (2016)

Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA

Por Langley, Sasha A, Miga, Karen H, Karpen, Gary H, Langley, Charles H
Publicado no eLife (2019)

TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats

Por Mikheenko, Alla, Bzikadze, Andrey V, Gurevich, Alexey, Miga, Karen H, Pevzner, Pavel A
Publicado no Bioinformatics (2020)

Improved data analysis for the MinION nanopore sequencer

Por Jain, Miten, Fiddes, Ian, Miga, Karen H., Olsen, Hugh E., Paten, Benedict, Akeson, Mark
Publicado no Nat Methods (2015)

Centromere reference models for human chromosomes X and Y satellite arrays

Por Miga, Karen H., Newton, Yulia, Jain, Miten, Altemose, Nicolas, Willard, Huntington F., Kent, W. James
Publicado em 2014

Human Artificial Chromosomes that Bypass Centromeric DNA

Por Logsdon, Glennis A., Gambogi, Craig W., Liskovykh, Mikhail A., Barrey, Evelyne J., Larionov, Vladimir, Miga, Karen H., Heun, Patrick, Black, Ben E.
Publicado no Cell (2019)

Linear assembly of a human centromere on the Y chromosome

Por Jain, Miten, Olsen, Hugh E, Turner, Daniel J, Stoddart, David, Bulazel, Kira V, Paten, Benedict, Haussler, David, Willard, Huntington F, Akeson, Mark, Miga, Karen H
Publicado no Nat Biotechnol (2018)

Replication of alpha-satellite DNA arrays in endogenous human centromeric regions and in human artificial chromosome

Por Erliandri, Indri, Fu, Haiqing, Nakano, Megumi, Kim, Jung-Hyun, Miga, Karen H., Liskovykh, Mikhail, Earnshaw, William C., Masumoto, Hiroshi, Kouprina, Natalay, Aladjem, Mirit I., Larionov, Vladimir
Publicado em 2014

HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads

Por Nurk, Sergey, Walenz, Brian P., Rhie, Arang, Vollger, Mitchell R., Logsdon, Glennis A., Grothe, Robert, Miga, Karen H., Eichler, Evan E., Phillippy, Adam M., Koren, Sergey
Publicado no Genome Res (2020)

DNA replication acts as an error correction mechanism to maintain centromere identity by restricting CENP-A to centromeres

Por Nechemia-Arbely, Yael, Miga, Karen H., Shoshani, Ofer, Aslanian, Aaron, McMahon, Moira A., Lee, Ah Young, Fachinetti, Daniele, Yates, John R., Ren, Bing, Cleveland, Don W.
Publicado no Nat Cell Biol (2019)

Heterochromatin-Encoded Satellite RNAs Induce Breast Cancer

Por Zhu, Quan, Hoong, Nien, Aslanian, Aaron, Hara, Toshiro, Benner, Christopher, Heinz, Sven, Miga, Karen H., Ke, Eugene, Verma, Sachin, Soroczynski, Jan, Yates, John R., Hunter, Tony, Verma, Inder M.
Publicado no Mol Cell (2018)

Human centromeric CENP-A chromatin is a homotypic, octameric nucleosome at all cell cycle points

Por Nechemia-Arbely, Yael, Fachinetti, Daniele, Miga, Karen H., Sekulic, Nikolina, Soni, Gautam V., Kim, Dong Hyun, Wong, Adeline K., Lee, Ah Young, Nguyen, Kristen, Dekker, Cees, Ren, Bing, Black, Ben E., Cleveland, Don W.
Publicado no J Cell Biol (2017)

Human chromosome‐specific aneuploidy is influenced by DNA‐dependent centromeric features

Por Dumont, Marie, Gamba, Riccardo, Gestraud, Pierre, Klaasen, Sjoerd, Worrall, Joseph T, De Vries, Sippe G, Boudreau, Vincent, Salinas‐Luypaert, Catalina, Maddox, Paul S, Lens, Susanne MA, Kops, Geert JPL, McClelland, Sarah E, Miga, Karen H, Fachinetti, Daniele
Publicado no EMBO J (2019)

Nanopore sequencing and assembly of a human genome with ultra-long reads

Por Jain, Miten, Koren, Sergey, Miga, Karen H, Quick, Josh, Rand, Arthur C, Sasani, Thomas A, Tyson, John R, Beggs, Andrew D, Dilthey, Alexander T, Fiddes, Ian T, Malla, Sunir, Marriott, Hannah, Nieto, Tom, O'Grady, Justin, Olsen, Hugh E, Pedersen, Brent S, Rhie, Arang, Richardson, Hollian, Quinlan, Aaron R, Snutch, Terrance P, Tee, Louise, Paten, Benedict, Phillippy, Adam M, Simpson, Jared T, Loman, Nicholas J, Loose, Matthew
Publicado no Nat Biotechnol (2018)

The UCSC Genome Browser database: 2015 update

Por Rosenbloom, Kate R., Armstrong, Joel, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Diekhans, Mark, Dreszer, Timothy R., Fujita, Pauline A., Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A., Heitner, Steve, Hickey, Glenn, Hinrichs, Angie S., Hubley, Robert, Karolchik, Donna, Learned, Katrina, Lee, Brian T., Li, Chin H., Miga, Karen H., Nguyen, Ngan, Paten, Benedict, Raney, Brian J., Smit, Arian F. A., Speir, Matthew L., Zweig, Ann S., Haussler, David, Kuhn, Robert M., Kent, W. James
Publicado no Nucleic Acids Res (2014)